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[192336_at] sugar-binding protein

Description C16H3.2 /REP_DB=WormBase Gene ID /WP=CE08236 /GEN=lec-9 /TR=Q94169 /GB=AAB07585.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar-binding protein
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 05      6grp_total > 22      4grp_total > 60      6grp_highest_sub > 02      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9809
1 2 3 4 range
A 8540.7
(1.9)
P 		7002.3
(1)
P 		10291.9
(3)
P 		519.3
(-3)
P 		9773
B 8807.4
(2.1)
P 		8182.8
(1.7)
P 		10328.4
(3)
P 		607
(-3)
P 		9721
C 7773.8
(2.5)
P 		7589.6
(2.4)
P 		8394.5
(3)
P 		637.5
(-3)
P 		7757
avr 8374
(2.1) 		7591.6
(1.6) 		9671.6
(3) 		587.9
(-3) 		9084

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5321
1 2 3 4 5 6 range
A 6835.4
(2.3)
P 		7367.5
(3)
P 		7065.5
(2.6)
P 		5607.7
(0.8)
P 		4210.6
(-1)
P 		2608.7
(-3)
P 		4759
B 7183.5
(2.3)
P 		7819.8
(3)
P 		6985.1
(2.1)
P 		5674
(0.6)
P 		3832.3
(-1.5)
P 		2498.5
(-3)
P 		5321
C 7056.9
(2.4)
P 		7550.3
(3)
P 		6704.5
(2)
P 		4995.9
(-0.1)
P 		4150.6
(-1.2)
P 		2649.9
(-3)
P 		4900
avr 7025.3
(2.3) 		7579.2
(3) 		6918.4
(2.2) 		5425.9
(0.4) 		4064.5
(-1.2) 		2585.7
(-3) 		4994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3034
1 2 3 4 range
A 3109.7
(3)
P 		1520
(-0.1)
P 		2690.5
(2.2)
P 		76
(-3)
P 		3034
B 2808.6
(3)
P 		2021
(1.2)
P 		2393.3
(2.1)
P 		129.3
(-3)
P 		2679
C 2573.4
(2.2)
P 		2182
(1.4)
P 		2925.7
(3)
P 		107.5
(-3)
P 		2818
avr 2830.6
(3) 		1907.7
(1) 		2669.8
(2.6) 		104.3
(-3) 		2726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1985
1 2 3 4 5 6 range
A 1260
(-1.1)
P 		2620.2
(3)
P 		1538.7
(-0.3)
P 		1422.2
(-0.6)
P 		1270.6
(-1.1)
P 		635.1
(-3)
P 		1985
B 2499.5
(2.6)
P 		2602.9
(3)
P 		1696.2
(-0.3)
P 		1502.8
(-0.9)
P 		1557
(-0.8)
P 		931.7
(-3)
P 		1671
C 2615.7
(3)
P 		2303.8
(1.9)
P 		1706.4
(-0.2)
P 		1004.7
(-2.6)
P 		1343.1
(-1.4)
P 		887.1
(-3)
P 		1729
avr 2125.1
(1.6) 		2509
(3) 		1647.1
(-0.1) 		1309.9
(-1.3) 		1390.2
(-1) 		818
(-3) 		1691
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17470
Sequence Type Exemplar sequence
Representative Public ID C16H3.2 NCBI
Target Description C16H3.2 /REP_DB=WormBase Gene ID /WP=CE08236 /GEN=lec-9 /TR=Q94169 /GB=AAB07585.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078443 NCBI Caenorhabditis elegans gaLECtin family member (lec-9) (lec-9) mRNA, complete cds. 11/11 None
SNAP00000016199 ENSEMBL cdna:SNAP chromosome:CEL140:X:17600432:17601332:1 11/11 None
GENEFINDER00000016205 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17600432:17601332:1 11/11 None
C16H3.2 ENSEMBL cdna:known chromosome:CEL140:X:17600347:17601413:1 gene:C16H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17600430-17601331(+) 100.0 100.0
Public Domain and Genome References
Gene Title sugar-binding protein
Gene Symbol lec-9
Ensembl C16H3.2
Entrez Gene 181786 Entrez gene
SwissProt Q94169 EMBL-EBI
WormBase CE08236 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07585 Galectin protein 9 [Caenorhabditis elegans] ref|NP_510844.1| gaLECtin family member (lec-9) [Caenorhabditis elegans] dbj|BAB11965.1| galectin LEC-9 [Caenorhabditis elegans] 1.0E-77
blast CAE58697 Hypothetical protein CBG01879 [Caenorhabditis briggsae] 5.0E-66
blast CAE71889 Hypothetical protein CBG18946 [Caenorhabditis briggsae] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.9E-37
Sequence
Target Sequence 
>C. ELEGANS:192336_AT
tcaatccatcagtcccaggaacctttgctctccccttcggagttcgcagcggacttcaaa
ttgctgtcaatggattggttaagcacaaaaaggactttgtcgtcaacctgatctccggtg
gaaacatcgctcttcacgtcaacttccgattcgagaagcagaagattgtggcaatcaacg
ctaaaattgataatgcatggggaaacgagatctcccacgccaacccacttcaccacgacc
aggccttcgacctgcaaatccgtgtctacccaggatacttccacatcaccaccaacggag
ttcttctcggagacttcccacatcgtcttccctttgaaagcattcaggctatcaatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCCATCAGTCCCAGGAACCTT 275 633 29 Antisense
CCTTCGGAGTTCGCAGCGGACTTCA 178 267 62 Antisense
GCGGACTTCAAATTGCTGTCAATGG 404 293 77 Antisense
AAGGACTTTGTCGTCAACCTGATCT 352 159 118 Antisense
CGTCAACCTGATCTCCGGTGGAAAC 304 245 129 Antisense
TCCGGTGGAAACATCGCTCTTCACG 469 593 142 Antisense
ATGGGGAAACGAGATCTCCCACGCC 245 51 225 Antisense
AATCCGTGTCTACCCAGGATACTTC 48 169 285 Antisense
CCACCAACGGAGTTCTTCTCGGAGA 559 273 317 Antisense
ACATCGTCTTCCCTTTGAAAGCATT 100 105 348 Antisense
GAAAGCATTCAGGCTATCAATCTCG 18 361 364 Antisense
Sequence Source Affymetrix Proprietary Database