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[192329_at]

Description F52C9.3 /REP_DB=WormBase Gene ID /WP=CE01961 /TR=SW:Q10123 /GB=AAA81060.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster 6grp_high1_10_10 > 58      4grp_high_8_8 > 34      6grp_total > 02      4grp_total > 47      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 103.1
(3)
P 		98.7
(2.7)
P 		41.9
(-1.4)
P 		18.9
(-3)
A 		84
B 127.3
(3)
P 		64.8
(-2.7)
P 		63.7
(-2.8)
P 		61.1
(-3)
P 		66
C 121
(3)
P 		41.2
(-3)
A 		84.2
(0.2)
P 		100.8
(1.5)
M 		80
avr 117.1
(3) 		68.2
(-2.2) 		63.3
(-2.7) 		60.3
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 52.5
(-0.2)
A 		70.4
(3)
P 		43.2
(-1.8)
P 		61.1
(1.3)
P 		36.6
(-3)
A 		69.1
(2.8)
P 		34
B 34.1
(1)
A 		37
(1.8)
P 		20.8
(-3)
A 		31
(0)
P 		40.9
(3)
P 		27.2
(-1.1)
A 		20
C 64.2
(1)
P 		64
(1)
P 		76.1
(3)
M 		49.9
(-1.4)
A 		57.5
(-0.1)
P 		40.3
(-3)
A 		36
avr 50.3
(-0.4) 		57.1
(3) 		46.7
(-2.2) 		47.3
(-1.9) 		45
(-3) 		45.5
(-2.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 37.6
(3)
P 		21.4
(0.2)
P 		11
(-1.6)
P 		2.8
(-3)
A 		35
B 40.6
(3)
P 		16
(-2.3)
P 		14.8
(-2.6)
P 		13
(-3)
P 		28
C 40.1
(3)
P 		11.9
(-3)
A 		29.4
(0.7)
P 		17
(-1.9)
M 		28
avr 39.4
(3) 		16.4
(-1.8) 		18.4
(-1.4) 		10.9
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.7
(-2.9)
A 		25
(3)
P 		9.4
(-3)
P 		15.5
(-0.7)
P 		11
(-2.4)
A 		16.8
(-0.2)
P 		16
B 11.9
(0.5)
A 		12.3
(0.8)
P 		5.1
(-3)
A 		8.2
(-1.4)
P 		16.6
(3)
P 		10.1
(-0.4)
A 		12
C 23.8
(3)
P 		19.5
(1.1)
P 		19.4
(1.1)
M 		10
(-3)
A 		18.6
(0.7)
P 		13.5
(-1.5)
A 		14
avr 15.1
(0) 		18.9
(3) 		11.3
(-2.9) 		11.2
(-3) 		15.4
(0.3) 		13.5
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6737
Sequence Type Exemplar sequence
Representative Public ID F52C9.3 NCBI
Target Description F52C9.3 /REP_DB=WormBase Gene ID /WP=CE01961 /TR=SW:Q10123 /GB=AAA81060.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cell division control protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065737
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014758 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5326588:5333280:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014754 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5321847-5328423(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAZ32806 Hypothetical protein F52C9.1a [Caenorhabditis elegans] 0.0
blast AAZ32807 Hypothetical protein F52C9.1b [Caenorhabditis elegans] 0.0
blast CAE56849 Hypothetical protein CBG24676 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 0.0010
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 1.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.55
Sequence
Target Sequence 
>C. ELEGANS:192329_AT
agctgaattcaaaacccgtcatttccgctgtcttccaagtttctggcttcagtatgatgt
tcttgctccaatatttgagcagtttcgagctccgcgagcccccaggatacctcttgatga
ggcaacgtcgaattgggcgaatagaaaatgggaaaactatcagtatctgacatatttgaa
tgatatcactggacgagttcgtggagaagtacataatcatccgatttttccgtgggtgtg
tgatttttccgaggaaaatggcgggtttcggcaattaaatcgaacgaaatatcggctgtg
caagggagatgatcaattaagagaaatgtactcccgtgagccatcgcatcacgttcccga
gctgctctcagacattggttacatggtctacagagcccgtgtggagcctaaggataacct
atgccggcatgtacgacggaagtgggtacccgaagagtacccatcgacgatgagcagaat
gtaccagtggactcctgacgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGAATTCAAAACCCGTCATTTC 220 67 1641 Antisense
TTTGAGCAGTTTCGAGCTCCGCGAG 146 667 1714 Antisense
AATCATCCGATTTTTCCGTGGGTGT 413 169 1855 Antisense
CCGTGGGTGTGTGATTTTTCCGAGG 197 263 1870 Antisense
GAGAAATGTACTCCCGTGAGCCATC 214 393 1961 Antisense
TTCCCGAGCTGCTCTCAGACATTGG 180 699 1994 Antisense
GTTACATGGTCTACAGAGCCCGTGT 708 445 2018 Antisense
AGAGCCCGTGTGGAGCCTAAGGATA 485 67 2032 Antisense
AACCTATGCCGGCATGTACGACGGA 96 89 2056 Antisense
GTACCCGAAGAGTACCCATCGACGA 515 457 2086 Antisense
ATGTACCAGTGGACTCCTGACGAGT 45 47 2119 Antisense
Sequence Source Affymetrix Proprietary Database