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[192327_at] Flavin-binding monooxygenase-like

Description C01H6.4 /REP_DB=WormBase Gene ID /WP=CE05187 /TR=Q17585 /GB=CAA95783.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Flavin-binding monooxygenase-like
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 61      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 445.2
(3)
P 		316.6
(-0.6)
P 		400.5
(1.7)
P 		231.9
(-3)
P 		213
B 329.9
(2)
P 		356.9
(3)
P 		298.8
(0.9)
P 		190.8
(-3)
P 		166
C 444.3
(3)
P 		317.9
(-0.1)
P 		350.6
(0.7)
P 		200.2
(-3)
P 		244
avr 406.5
(3) 		330.5
(0.7) 		350
(1.3) 		207.6
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 271.8
(-2)
P 		392.4
(-0.2)
P 		606.2
(3)
P 		563.3
(2.4)
P 		309
(-1.4)
P 		201.1
(-3)
P 		405
B 343.9
(-0.6)
P 		448.6
(1.1)
P 		560.4
(3)
P 		390
(0.1)
P 		359
(-0.4)
P 		202.5
(-3)
P 		358
C 374.9
(0)
P 		412.1
(0.8)
P 		507.4
(2.7)
P 		519.9
(3)
P 		311.4
(-1.2)
P 		225.5
(-3)
P 		294
avr 330.2
(-0.9) 		417.7
(0.6) 		558
(3) 		491.1
(1.8) 		326.5
(-1) 		209.7
(-3) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 162.1
(3)
P 		68.7
(-1.4)
P 		104.7
(0.3)
P 		34
(-3)
P 		128
B 105.2
(3)
P 		88.2
(1.4)
P 		69.2
(-0.3)
P 		40.7
(-3)
P 		65
C 147.1
(3)
P 		91.4
(0.1)
P 		122.2
(1.7)
P 		33.8
(-3)
P 		113
avr 138.1
(3) 		82.8
(-0.3) 		98.7
(0.7) 		36.2
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 50.1
(-2.9)
P 		139.6
(2.8)
P 		132
(2.3)
P 		142.9
(3)
P 		93.2
(-0.2)
P 		49
(-3)
P 		94
B 119.7
(0.6)
P 		149.3
(3)
P 		136.1
(1.9)
P 		103.3
(-0.7)
P 		145.8
(2.7)
P 		75.5
(-3)
P 		74
C 138.9
(3)
P 		125.8
(1.8)
P 		129.1
(2.1)
P 		104.6
(-0.2)
P 		100.8
(-0.6)
P 		75.5
(-3)
P 		63
avr 102.9
(0) 		138.2
(3) 		132.4
(2.5) 		116.9
(1.2) 		113.3
(0.9) 		66.7
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.837
Sequence Type Exemplar sequence
Representative Public ID C01H6.4 NCBI
Target Description C01H6.4 /REP_DB=WormBase Gene ID /WP=CE05187 /TR=Q17585 /GB=CAA95783.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Flavin-binding monooxygenase-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059637 NCBI Caenorhabditis elegans C01H6.4 (C01H6.4) mRNA, complete cds. 11/11 None
SNAP00000008118 ENSEMBL cdna:SNAP chromosome:CEL140:I:7218724:7220571:1 11/11 None
GENEFINDER00000008130 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7218724:7225693:1 11/11 None
C01H6.4 ENSEMBL cdna:known chromosome:CEL140:I:7218724:7220739:1 gene:C01H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7218654-7220670(+) 100.0 100.0
Public Domain and Genome References
Gene Title Flavin-binding monooxygenase-like
Ensembl C01H6.4
Entrez Gene 182092 Entrez gene
SwissProt Q17585 EMBL-EBI
WormBase CE30237 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260993_AT flavin-containing monooxygenase family protein / FMO family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95783 Hypothetical protein C01H6.4 [Caenorhabditis elegans] ref|NP_492038.2| C01H6.4 [Caenorhabditis elegans] 0.0
blast CAE74246 Hypothetical protein CBG21932 [Caenorhabditis briggsae] 0.0
blast CAE74246 Hypothetical protein CBG21932 [Caenorhabditis briggsae] 1.0E-175
blast CAE65725 Hypothetical protein CBG10808 [Caenorhabditis briggsae] 1.0E-130
blast CAE65725 Hypothetical protein CBG10808 [Caenorhabditis briggsae] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:192327_AT
gaaggagatcatgttcctgctgatgtcataattgtttgcaccggatatgttttcaagttt
ccatttctggactcttcactaattcaattgaaatataatgatcgtatggtatctccactt
tatgaacatctttgccatgttgattatccaacaacactattcttcattggccttcctctc
ggaacaattacctttccgttgttcgaagtgcaagttaaatacgcgctctcactgatcgcc
ggaaagggaaaactgccgtcggatgatgttgagattcggaattttgaagatgcacgtctt
caaggtcttctgaatcccgcatcatttcatgttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAGATCATGTTCCTGCTGATG 197 335 787 Antisense
GATGTCATAATTGTTTGCACCGGAT 500 409 808 Antisense
TGCACCGGATATGTTTTCAAGTTTC 34 571 823 Antisense
TCCATTTCTGGACTCTTCACTAATT 274 591 846 Antisense
GGTATCTCCACTTTATGAACATCTT 499 505 894 Antisense
GCCTTCCTCTCGGAACAATTACCTT 340 279 956 Antisense
TTACCTTTCCGTTGTTCGAAGTGCA 285 1 974 Antisense
TTAAATACGCGCTCTCACTGATCGC 2 685 1001 Antisense
GAAAGGGAAAACTGCCGTCGGATGA 333 337 1028 Antisense
AGATGCACGTCTTCAAGGTCTTCTG 434 67 1074 Antisense
GAATCCCGCATCATTTCATGTTATA 664 329 1098 Antisense
Sequence Source Affymetrix Proprietary Database