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[192326_at] serine/threonine-protein kinase

Description F39F10.3 /REP_DB=WormBase Gene ID /WP=CE07205 /TR=Q20192 /GB=AAB00613.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_total > 78      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 34.6
(-1.8)
A 		18.1
(-3)
A 		41.2
(-1.3)
A 		101.7
(3)
A 		84
B 42.5
(-1.5)
A 		64.4
(3)
A 		43.8
(-1.2)
A 		35.3
(-3)
A 		29
C 32
(-0.8)
A 		35
(-0.5)
A 		6.3
(-3)
A 		75
(3)
A 		69
avr 36.4
(-2.1) 		39.2
(-1.7) 		30.4
(-3) 		70.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 37
(-1.6)
A 		25.7
(-2.3)
A 		14.9
(-3)
A 		42.2
(-1.3)
A 		55.8
(-0.4)
A 		110.2
(3)
A 		95
B 50.3
(-0.3)
A 		33.4
(-1.4)
A 		8.6
(-3)
A 		24.3
(-2)
A 		74.9
(1.3)
A 		101.2
(3)
A 		93
C 10
(-2.8)
A 		36.2
(-1.7)
A 		17
(-2.5)
A 		5.9
(-3)
A 		38.8
(-1.6)
A 		142.2
(3)
P 		136
avr 32.4
(-1.9) 		31.8
(-1.9) 		13.5
(-3) 		24.1
(-2.4) 		56.5
(-0.5) 		117.9
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.6
(1.7)
A 		3.9
(-3)
A 		10.8
(0.8)
A 		14.9
(3)
A 		11
B 13.5
(1.3)
A 		15.9
(3)
A 		10.2
(-1.1)
A 		7.5
(-3)
A 		8
C 10.6
(1.8)
A 		10.1
(1.6)
A 		2.2
(-3)
A 		12.6
(3)
A 		10
avr 12.2
(3) 		10
(0.1) 		7.7
(-3) 		11.7
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 6.8
(-2.1)
A 		9.2
(-1.5)
A 		3.2
(-3)
A 		10.7
(-1.1)
A 		16.8
(0.5)
A 		26.8
(3)
A 		24
B 17.5
(-0.4)
A 		11.1
(-1.5)
A 		2.1
(-3)
A 		6.4
(-2.3)
A 		30.4
(1.8)
A 		37.7
(3)
A 		36
C 3.7
(-2.7)
A 		11
(-1.7)
A 		4.3
(-2.6)
A 		1.2
(-3)
A 		12.5
(-1.5)
A 		47.6
(3)
P 		46
avr 9.3
(-1.9) 		10.4
(-1.7) 		3.2
(-3) 		6.1
(-2.5) 		19.9
(-0.1) 		37.4
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17450
Sequence Type Exemplar sequence
Representative Public ID F39F10.3 NCBI
Target Description F39F10.3 /REP_DB=WormBase Gene ID /WP=CE07205 /TR=Q20192 /GB=AAB00613.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078329 NCBI Caenorhabditis elegans F39F10.3 (F39F10.3) mRNA, complete cds. 11/11 None
SNAP00000020490 ENSEMBL cdna:SNAP chromosome:CEL140:X:16891904:16892940:1 11/11 None
GENEFINDER00000020496 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16891904:16892940:1 11/11 None
F39F10.3 ENSEMBL cdna:known chromosome:CEL140:X:16891904:16892940:1 gene:F39F10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16891903-16892940(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine-protein kinase
Ensembl F39F10.3
Entrez Gene 185498 Entrez gene
SwissProt Q20192 EMBL-EBI
WormBase CE07205 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00613 Hypothetical protein F39F10.3 [Caenorhabditis elegans] ref|NP_510730.1| F39F10.3 [Caenorhabditis elegans] 1.0E-165
blast AAA83281 Hypothetical protein F22F1.2 [Caenorhabditis elegans] ref|NP_509374.1| F22F1.2 [Caenorhabditis elegans] 1.0E-89
blast AAB00614 Hypothetical protein F39F10.2 [Caenorhabditis elegans] ref|NP_510731.1| F39F10.2 [Caenorhabditis elegans] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0012
Pfam IPR000719 EMBL-EBI Protein kinase 5.5E-10
Sequence
Target Sequence 
>C. ELEGANS:192326_AT
ctcgcactcgagcaatatgttccaactcgtactcgttgatttcgggtgtgcacgccgctt
caaagatgtcaacggaaatcggactccaccagcaccgtacccgagcaactgcatcaaagg
gcttcacatccctcctcattccgcactaggcatgccacatatggaggcagaggacatcat
gcaggttgcctacctgtcatgccttcttcggcaatatgctccgtggaaagatgatgatga
attcaagatgacaagaaagaagatgtcgctcgcgttgaatccggaaaagtttttggaaga
acatcaggatcttttgccagttatcaagcttttggctgcacagaagcactacgcggagcc
cgactacattgccattctggaccttcttcaacagatgctccactcttcgggaggaggact
cgcaaacggttcgcttaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCACTCGAGCAATATGTTCCAA 293 233 435 Antisense
GTACTCGTTGATTTCGGGTGTGCAC 506 459 463 Antisense
CCGTACCCGAGCAACTGCATCAAAG 162 265 529 Antisense
CATTCCGCACTAGGCATGCCACATA 351 217 571 Antisense
ATGCAGGTTGCCTACCTGTCATGCC 648 43 613 Antisense
CCTTCTTCGGCAATATGCTCCGTGG 526 269 636 Antisense
TGTCGCTCGCGTTGAATCCGGAAAA 522 555 698 Antisense
GCTGCACAGAAGCACTACGCGGAGC 82 297 769 Antisense
CCGACTACATTGCCATTCTGGACCT 514 261 794 Antisense
GATGCTCCACTCTTCGGGAGGAGGA 630 413 828 Antisense
GACTCGCAAACGGTTCGCTTAATGC 378 375 851 Antisense
Sequence Source Affymetrix Proprietary Database