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[192322_s_at] alpha-1-macroglobulin-like domain

Description F13D2.1 /REP_DB=WormBase Gene ID /WP=CE09370 /TR=Q93191 /GB=CAA90605.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=alpha-1-macroglobulin-like domain
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 340.7
(-0)
P 		380.8
(3)
P 		343.5
(0.2)
P 		301.1
(-3)
P 		80
B 400.1
(3)
P 		350.1
(-0.6)
P 		323.5
(-2.6)
P 		317.6
(-3)
P 		83
C 384
(3)
P 		341.3
(-0.3)
P 		313.3
(-2.5)
P 		307
(-3)
P 		77
avr 374.9
(3) 		357.4
(1.4) 		326.8
(-1.4) 		308.6
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 472.3
(1.5)
P 		528
(3)
P 		406.9
(-0.2)
P 		449.1
(0.9)
P 		300.9
(-3)
P 		397.4
(-0.5)
P 		227
B 448.4
(2.4)
P 		403.7
(0.9)
P 		466.5
(3)
P 		374.9
(-0)
P 		286.2
(-3)
P 		356.9
(-0.6)
P 		180
C 490.9
(2.2)
P 		503.8
(2.6)
P 		518.2
(3)
P 		403.2
(-0.4)
P 		313.9
(-3)
P 		356.3
(-1.8)
P 		204
avr 470.5
(2.7) 		478.5
(3) 		463.9
(2.5) 		409.1
(0.7) 		300.3
(-3) 		370.2
(-0.6) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 124
(3)
P 		82.7
(-0.1)
P 		89.8
(0.4)
P 		44.1
(-3)
P 		80
B 127.6
(3)
P 		86.5
(-1.1)
P 		75
(-2.3)
P 		67.7
(-3)
P 		60
C 127.1
(3)
P 		98.1
(0.7)
P 		109.2
(1.6)
P 		51.8
(-3)
P 		75
avr 126.2
(3) 		89.1
(-0.1) 		91.3
(0.1) 		54.5
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 87.1
(-3)
P 		187.8
(3)
P 		88.6
(-2.9)
P 		113.9
(-1.4)
P 		90.8
(-2.8)
P 		96.8
(-2.4)
P 		101
B 156
(3)
P 		134.4
(0.7)
P 		113.3
(-1.5)
P 		99.3
(-3)
P 		116.3
(-1.2)
P 		133.1
(0.6)
P 		57
C 181.9
(3)
P 		153.7
(1.3)
P 		131.9
(0)
P 		81.1
(-3)
P 		101.6
(-1.8)
P 		119.3
(-0.7)
P 		101
avr 141.7
(1.3) 		158.6
(3) 		111.3
(-1.7) 		98.1
(-3) 		102.9
(-2.5) 		116.4
(-1.2) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192322_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17165
Sequence Type Exemplar sequence
Representative Public ID F13D2.1 NCBI
Target Description F13D2.1 /REP_DB=WormBase Gene ID /WP=CE09370 /TR=Q93191 /GB=CAA90605.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=alpha-1-macroglobulin-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077463 NCBI Caenorhabditis elegans F13D2.1 (F13D2.1) mRNA, complete cds. 11/11 None
SNAP00000024340 ENSEMBL cdna:SNAP chromosome:CEL140:X:11164001:11166157:-1 11/11 None
GENEFINDER00000024344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11164001:11167158:-1 11/11 None
F13D2.1 ENSEMBL cdna:known chromosome:CEL140:X:11163880:11175070:-1 gene:F13D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11164000-11175070(-) 100.0 100.0
Public Domain and Genome References
Gene Title alpha-1-macroglobulin-like domain
Ensembl F13D2.1
Entrez Gene 181305 Entrez gene
SwissProt Q93191 EMBL-EBI
WormBase CE37347 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91972 Hypothetical protein F13D2.1 [Caenorhabditis elegans] emb|CAA90605.4| Hypothetical protein F13D2.1 [Caenorhabditis elegans] ref|NP_509864.3| F13D2.1 [Caenorhabditis elegans] 0.0
blast CAE70691 Hypothetical protein CBG17408 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:192322_S_AT
tatttcttgaatgactcctacaccccaataaacccttcatcatctgcactcggactccat
ttcataatcacaaacatcgtgtcaaatcaaacactttgttacaaagttgcattaagcgaa
tctagaggtggaaaaaatattccatataaatcggcaccagttccgatcagggctacacat
cctgtacaaggagaatgctcttgtgcggaaaccacatgcagcgtaaagtgcaacaagtgt
catcaagattcacctgaaaatttacaacagctactttcaacaaatgggatctttggaatt
cgtttcgaattggtttcaataagcaattcgttgatgaatggtgcgaattatacaatttat
gatggaactgtaaaagacagcaatggtctgggagcagcagcgtttgaattgtcaaaaaaa
gtacgcgtgtggttgcgttcttgtaatgtgggttgtacaccaggagagaaaactttgaag
cgagattattatgtgttgggacatgaagatggtttaaattcggattcttatggaagacaa
aactacattctcaatcacatggatcgttttgaggagagttcttacgactgccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTCTTGAATGACTCCTACACCC 96 663 3190 Antisense
CAATAAACCCTTCATCATCTGCACT 386 181 3215 Antisense
TCTGCACTCGGACTCCATTTCATAA 643 607 3232 Antisense
ATCGGCACCAGTTCCGATCAGGGCT 129 35 3339 Antisense
GATCAGGGCTACACATCCTGTACAA 18 421 3354 Antisense
GGAGAATGCTCTTGTGCGGAAACCA 177 519 3379 Antisense
GCGGAAACCACATGCAGCGTAAAGT 58 293 3394 Antisense
GCAATGGTCTGGGAGCAGCAGCGTT 619 321 3569 Antisense
GTGGTTGCGTTCTTGTAATGTGGGT 527 487 3618 Antisense
CTACATTCTCAATCACATGGATCGT 310 225 3732 Antisense
GAGGAGAGTTCTTACGACTGCCAAA 14 405 3760 Antisense
Sequence Source Affymetrix Proprietary Database