[Home] | [Total List]

[192321_s_at] serine/threonine-protein kinase

Description F46G11.3 /REP_DB=WormBase Gene ID /WP=CE04586 /TR=Q20483 /GB=AAA81395.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_high1_10_10 > 23      6grp_total > 12      4grp_total > 63      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 516.8
(3)
P 		453.3
(-1.5)
A 		500
(1.8)
A 		432.2
(-3)
A 		85
B 478.8
(-0.5)
P 		438.1
(-3)
A 		535.9
(3)
A 		456
(-1.9)
A 		98
C 481.9
(-0.1)
P 		397.6
(-3)
A 		570.9
(3)
P 		453.5
(-1.1)
A 		173
avr 492.5
(0.6) 		429.7
(-3) 		535.6
(3) 		447.2
(-2) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 452.4
(0.8)
A 		492
(3)
P 		444
(0.3)
P 		433.2
(-0.3)
P 		427.5
(-0.6)
P 		385.8
(-3)
M 		106
B 532.5
(1.4)
P 		584.8
(3)
P 		495.9
(0.3)
P 		578.4
(2.8)
P 		387.9
(-3)
A 		395.2
(-2.8)
P 		197
C 418.5
(-1.2)
M 		594.2
(3)
P 		486.5
(0.4)
P 		426.3
(-1)
P 		341.5
(-3)
M 		362.1
(-2.5)
P 		253
avr 467.8
(-0) 		557
(3) 		475.5
(0.2) 		479.3
(0.4) 		385.6
(-2.8) 		381
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 188.2
(3)
P 		98.4
(-1.3)
A 		130.7
(0.2)
A 		63.3
(-3)
A 		125
B 152.7
(3)
P 		108.2
(-1.8)
A 		124.2
(-0.1)
A 		97.2
(-3)
A 		56
C 159.5
(1.1)
P 		114.3
(-1.1)
A 		199
(3)
P 		76.5
(-3)
A 		123
avr 166.8
(3) 		107
(-1.1) 		151.3
(1.9) 		79
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 83.4
(-3)
A 		175
(3)
P 		96.7
(-2.1)
P 		109.9
(-1.3)
P 		129
(-0)
P 		93.9
(-2.3)
M 		92
B 185.3
(2.2)
P 		194.7
(3)
P 		120.4
(-3)
P 		153.2
(-0.4)
P 		157.6
(0)
A 		147.4
(-0.8)
P 		74
C 155.1
(1.4)
M 		181.3
(3)
P 		123.8
(-0.6)
P 		85.7
(-3)
P 		110.5
(-1.4)
M 		121.2
(-0.8)
P 		96
avr 141.3
(-0.6) 		183.7
(3) 		113.6
(-3) 		116.3
(-2.8) 		132.4
(-1.4) 		120.8
(-2.4) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192321_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16935
Sequence Type Exemplar sequence
Representative Public ID F46G11.3 NCBI
Target Description F46G11.3 /REP_DB=WormBase Gene ID /WP=CE04586 /TR=Q20483 /GB=AAA81395.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076570 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-257) (tag-257) mRNA, complete cds. 11/11 None
SNAP00000029322 ENSEMBL cdna:SNAP chromosome:CEL140:X:5783363:5786108:1 11/11 None
GENEFINDER00000029329 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5783363:5786108:1 11/11 None
F46G11.3 ENSEMBL cdna:known chromosome:CEL140:X:5783363:5786364:1 gene:F46G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5783362-5786108(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine-protein kinase
Gene Symbol tag-257
Ensembl F46G11.3
Entrez Gene 180844 Entrez gene
SwissProt Q20483 EMBL-EBI
WormBase CE04586 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81395 Temporarily assigned gene name protein 257 [Caenorhabditis elegans] ref|NP_508971.1| Temporarily Assigned Gene name family member (tag-257) [Caenorhabditis elegans] 0.0
blast NP_005246 cyclin G associated kinase [Homo sapiens] dbj|BAA22623.1| HsGAK [Homo sapiens] 3.0E-44
blast O14976 Cyclin G-associated kinase 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-50
Sequence
Target Sequence 
>C. ELEGANS:192321_S_AT
gagccaacaaatactacaccacgccccgggcacccttcaacatctccgaagcttgtgcca
aaaacacatagatcaaatcaacagcaagagaaaaacgcaccaccgagaccacccacaaca
gcaagccctcgtgcagccccagttgcaacattcaaagtttcatggccgactgatagttct
cagaatgattctgcaaacgattggggagactttagtcaagcaccgccagcggtgaatgtt
tcgaaaaaagacgtattcgatccgtttagcgagtcagcatcacacaatttgtctgcaaaa
catagcgaagatctgttatccttacagaattggccaggaactgctgagcacaaaccagag
gtacgatcccaatcttcacgagacttgtttgactttgacgacctgatgctccgacacacg
acaccttccgccgaatcttctcaagctgttttacaaccaatacgccaagtggagaacaag
aacttgaccaaagtcgatgtttcaaaaaacggaattggttcgtcatcctcttctgccagc
ctggatgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAACAAATACTACACCACGCC 290 385 1138 Antisense
ACATCTCCGAAGCTTGTGCCAAAAA 306 105 1177 Antisense
GCAGCCCCAGTTGCAACATTCAAAG 119 315 1270 Antisense
GTTTCATGGCCGACTGATAGTTCTC 122 449 1294 Antisense
GGGAGACTTTAGTCAAGCACCGCCA 483 495 1341 Antisense
GATCCGTTTAGCGAGTCAGCATCAC 105 417 1396 Antisense
AACCAGAGGTACGATCCCAATCTTC 241 147 1490 Antisense
GATCCCAATCTTCACGAGACTTGTT 233 415 1502 Antisense
GAGACTTGTTTGACTTTGACGACCT 499 391 1517 Antisense
AACGGAATTGGTTCGTCATCCTCTT 703 143 1645 Antisense
TCCTCTTCTGCCAGCCTGGATGATA 435 593 1663 Antisense
Sequence Source Affymetrix Proprietary Database