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[192319_at] thyroglobulin and EF hand domains

Description T04F3.2 /REP_DB=WormBase Gene ID /WP=CE06357 /TR=Q22157 /GB=CAA96669.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thyroglobulin and EF hand domains
Cluster 6grp_high1_10_10 > 42      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_total > 30      4grp_total > 28      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 99.3
(0.2)
P 		122.1
(2.5)
P 		67.9
(-3)
P 		126.5
(3)
P 		59
B 112.8
(-1.5)
P 		100.4
(-2.8)
P 		98.7
(-3)
P 		153.7
(3)
P 		55
C 151.1
(2.4)
P 		160.9
(3)
P 		59.3
(-3)
P 		103.3
(-0.4)
P 		102
avr 121.1
(2.2) 		127.8
(3) 		75.3
(-3) 		127.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 109.8
(-0.3)
P 		130.8
(0.8)
P 		173.5
(3)
P 		165.4
(2.6)
P 		86
(-1.6)
P 		59.4
(-3)
P 		114
B 85
(-1.7)
P 		161.9
(2.6)
P 		168.4
(3)
P 		155.9
(2.3)
P 		152.8
(2.1)
P 		62.2
(-3)
P 		106
C 73.9
(-2.1)
P 		200.7
(3)
P 		91.7
(-1.4)
M 		117.3
(-0.4)
P 		67.9
(-2.3)
P 		51.4
(-3)
P 		149
avr 89.6
(-1.2) 		164.5
(3) 		144.5
(1.9) 		146.2
(2) 		102.2
(-0.5) 		57.7
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 36.1
(3)
P 		26.5
(-0.1)
P 		17.8
(-3)
P 		18.5
(-2.8)
P 		18
B 36
(3)
P 		24.8
(-2.1)
P 		22.9
(-3)
P 		32.7
(1.5)
P 		13
C 50
(3)
P 		46.3
(2.3)
P 		20.7
(-2.4)
P 		17.4
(-3)
P 		33
avr 40.7
(3) 		32.5
(0.6) 		20.5
(-3) 		22.9
(-2.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 20.2
(-1.9)
P 		46.5
(3)
P 		37.8
(1.4)
P 		42
(2.2)
P 		26
(-0.8)
P 		14.5
(-3)
P 		32
B 29.6
(-2)
P 		53.9
(1.7)
P 		40.9
(-0.3)
P 		41.3
(-0.2)
P 		62.1
(3)
P 		23.2
(-3)
P 		39
C 27.4
(-1.6)
P 		61.2
(3)
P 		23.3
(-2.2)
M 		23.6
(-2.1)
P 		22
(-2.3)
P 		17.2
(-3)
P 		44
avr 25.7
(-1.8) 		53.9
(3) 		34
(-0.4) 		35.6
(-0.1) 		36.7
(0.1) 		18.3
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14391
Sequence Type Exemplar sequence
Representative Public ID T04F3.2 NCBI
Target Description T04F3.2 /REP_DB=WormBase Gene ID /WP=CE06357 /TR=Q22157 /GB=CAA96669.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thyroglobulin and EF hand domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073563 NCBI Caenorhabditis elegans T04F3.2 (T04F3.2) mRNA, complete cds. 11/11 None
SNAP00000035117 ENSEMBL cdna:SNAP chromosome:CEL140:V:11760257:11761181:1 11/11 None
GENEFINDER00000035125 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11760257:11761181:1 11/11 None
T04F3.2 ENSEMBL cdna:known chromosome:CEL140:V:11760257:11761181:1 gene:T04F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11760256-11761181(+) 100.0 100.0
Public Domain and Genome References
Gene Title thyroglobulin and EF hand domains
Ensembl T04F3.2
Entrez Gene 179609 Entrez gene
SwissProt Q22157 EMBL-EBI
WormBase CE06357 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641530_S_AT dm
DROSGENOME1:154551_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96669 Hypothetical protein T04F3.2 [Caenorhabditis elegans] ref|NP_505964.1| T04F3.2 [Caenorhabditis elegans] 1.0E-151
blast CAE75306 Hypothetical protein CBG23276 [Caenorhabditis briggsae] 1.0E-135
blast XP_394975 PREDICTED: similar to CG2264A, partial [Apis mellifera] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.9E-5
Sequence
Target Sequence 
>C. ELEGANS:192319_AT
tattccaacatgttctccaaaaaactcattattatatgataaagtgcaatgctatgatgt
ttcaatttattgttggtgtgtggacgaactgtccggagagccaaagttaggctcatcgac
aacaagaggaaaaccaaaatgtgaagaaactccaacaactacagttgctccaaaaagagt
gagaagaaacaatcggtgtaaggaaaagaagagaacacgatttctgaggcgattagtatc
aactctcaaatcagaaatgataatgagtggaataaatgcaacaaaagttagcagagattc
agcaattagatggaagtttaatcaactcaatataaatcataataatgtgcttgaaagaag
tgaatggaaaccttttaaatcagttttgttagaatggaagaatgtcagacagtgctccag
aaatcttttcaaaacttgcgatctgaataaggatagaaaattgacattcgatgaatggag
aaaatgcattgttcaagaaatcaaccgagtaccagccaaacgtccagatcaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCAACATGTTCTCCAAAAAAC 223 663 228 Antisense
AAGTGCAATGCTATGATGTTTCAAT 380 159 269 Antisense
ATTGTTGGTGTGTGGACGAACTGTC 249 3 296 Antisense
GACGAACTGTCCGGAGAGCCAAAGT 166 381 310 Antisense
GCCAAAGTTAGGCTCATCGACAACA 321 269 327 Antisense
AACACGATTTCTGAGGCGATTAGTA 526 135 441 Antisense
GAGGCGATTAGTATCAACTCTCAAA 388 403 453 Antisense
GAATGTCAGACAGTGCTCCAGAAAT 619 331 627 Antisense
GAAATCTTTTCAAAACTTGCGATCT 681 361 647 Antisense
AGAAATCAACCGAGTACCAGCCAAA 3 73 723 Antisense
CCAGCCAAACGTCCAGATCAACTAA 549 273 739 Antisense
Sequence Source Affymetrix Proprietary Database