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[192316_at] serine /threonine-protein kinase

Description F38E1.3 /REP_DB=WormBase Gene ID /WP=CE04522 /TR=Q20160 /GB=AAA83477.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_total > 86      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 4.5
(-3)
A 		31.7
(1)
A 		10.6
(-2.1)
A 		44.8
(3)
A 		40
B 2.9
(-3)
A 		19.1
(-0.6)
A 		28.5
(0.8)
A 		43.4
(3)
A 		41
C 40.1
(-1.4)
A 		21.7
(-3)
A 		23.8
(-2.8)
A 		91
(3)
A 		69
avr 15.8
(-3) 		24.2
(-1.9) 		21
(-2.3) 		59.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 25.9
(-0.3)
A 		5.5
(-3)
A 		50.7
(3)
A 		19.5
(-1.1)
A 		46.6
(2.5)
A 		39.1
(1.5)
A 		45
B 9.3
(-2.5)
A 		4.7
(-3)
A 		27.3
(-0.3)
A 		37.1
(0.9)
A 		43.9
(1.7)
A 		55.1
(3)
M 		50
C 6
(-3)
A 		27.8
(-1)
A 		5.8
(-3)
A 		20.8
(-1.6)
A 		14
(-2.2)
A 		70.5
(3)
A 		65
avr 13.7
(-2.9) 		12.7
(-3) 		27.9
(-0.8) 		25.8
(-1.1) 		34.8
(0.1) 		54.9
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-3)
A 		6.9
(3)
A 		2.8
(-1.6)
A 		6.6
(2.7)
A 		5
B 0.9
(-3)
A 		4.7
(-0.3)
A 		6.6
(1.1)
A 		9.2
(3)
A 		8
C 13.3
(1.7)
A 		6.2
(-3)
A 		8.3
(-1.6)
A 		15.3
(3)
A 		9
avr 5.3
(-3) 		5.9
(-2.3) 		5.9
(-2.3) 		10.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.8
(-1.6)
A 		1.9
(-3)
A 		11
(1.5)
A 		4.9
(-1.5)
A 		14.1
(3)
A 		9.5
(0.7)
A 		12
B 3.2
(-2.5)
A 		1.6
(-3)
A 		6.6
(-1.4)
A 		9.8
(-0.4)
A 		17.8
(2.1)
A 		20.6
(3)
M 		19
C 2.2
(-2.8)
A 		8.5
(-1.1)
A 		1.5
(-3)
A 		4.2
(-2.3)
A 		4.5
(-2.2)
A 		23.6
(3)
A 		22
avr 3.4
(-3) 		4
(-2.8) 		6.4
(-1.8) 		6.3
(-1.8) 		12.1
(0.6) 		17.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12157
Sequence Type Exemplar sequence
Representative Public ID F38E1.3 NCBI
Target Description F38E1.3 /REP_DB=WormBase Gene ID /WP=CE04522 /TR=Q20160 /GB=AAA83477.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072758 NCBI Caenorhabditis elegans F38E1.3 (F38E1.3) mRNA, complete cds. 11/11 None
SNAP00000006030 ENSEMBL cdna:SNAP chromosome:CEL140:V:8378783:8380480:1 11/11 None
F38E1.3 ENSEMBL cdna:known chromosome:CEL140:V:8378731:8380480:1 gene:F38E1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8378783-8380481(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine /threonine-protein kinase
Ensembl F38E1.3
Entrez Gene 179220 Entrez gene
SwissProt Q20160 EMBL-EBI
WormBase CE04522 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83477 Hypothetical protein F38E1.3 [Caenorhabditis elegans] ref|NP_505159.1| F38E1.3 [Caenorhabditis elegans] 1.0E-172
blast CAE66061 Hypothetical protein CBG11274 [Caenorhabditis briggsae] 1.0E-136
blast CAE59131 Hypothetical protein CBG02430 [Caenorhabditis briggsae] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-25
Sequence
Target Sequence 
>C. ELEGANS:192316_AT
tggagcttgctggatctagtttggctgatttgaagagaaatagaggaaaggcattcactt
gtccaactggattgagcgtgtctcagcaatgcctggaagcttgcgaagatctccacaaac
atggattcattcaccgtgacttgaagcctgcgaactttgcatgtggagctgacgataaac
aacataccatctacatcctcgactttggaatctctcgaagaatcatcaacaatcaaaata
agctgaaaactcctcgagttacgattcgcttcaaaggaactctgaaattcgcatctttat
catgtcataaaggaatcgaaatgggatggaaagacgattgtgagagttggttttacatgc
ttcttgacttgattgttccatttggattagtttggcgaggagcgaatgacaaggatactg
tttgtaaactgaaagaagaggcacgtggaaagaaggaaatgtttcaaggaatcaaatgcg
gtgtagaactgaataaaatcattgtttatattgataagctacaatatcaggatcacgttg
actatcagtacatctacaagactctcgttgacgcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCTTGCTGGATCTAGTTTGGC 436 549 323 Antisense
AGGCATTCACTTGTCCAACTGGATT 430 53 371 Antisense
TTGAGCGTGTCTCAGCAATGCCTGG 18 705 394 Antisense
AAACATGGATTCATTCACCGTGACT 554 127 439 Antisense
GAAGCCTGCGAACTTTGCATGTGGA 238 345 465 Antisense
ATCCTCGACTTTGGAATCTCTCGAA 555 39 517 Antisense
AACTCCTCGAGTTACGATTCGCTTC 557 141 570 Antisense
GAAATTCGCATCTTTATCATGTCAT 458 363 606 Antisense
GAGTTGGTTTTACATGCTTCTTGAC 679 397 666 Antisense
GCTTCTTGACTTGATTGTTCCATTT 632 305 681 Antisense
TCTACAAGACTCTCGTTGACGCATG 709 613 875 Antisense
Sequence Source Affymetrix Proprietary Database