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[192307_at] zinc-finger transcription factor

Description C55C2.1 /REP_DB=WormBase Gene ID /WP=CE16948 /TR=O01830 /GB=AAB54197.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc-finger transcription factor
Cluster 6grp_total > 44      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 44.8
(-3)
A 		75.6
(2)
A 		81.7
(3)
A 		66.1
(0.5)
A 		37
B 49.3
(-3)
A 		94
(3)
A 		56.2
(-2.1)
A 		77.8
(0.8)
A 		45
C 78.5
(2.1)
A 		86.3
(3)
A 		32.8
(-3)
A 		74
(1.6)
A 		54
avr 57.5
(-2.9) 		85.3
(3) 		56.9
(-3) 		72.6
(0.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 51.7
(0.2)
A 		47.9
(-0)
A 		90.3
(3)
A 		6.4
(-3)
A 		57.4
(0.6)
A 		23.6
(-1.8)
A 		84
B 58.5
(3)
A 		53.2
(2.1)
A 		39.4
(-0.1)
A 		23.1
(-2.8)
A 		21.6
(-3)
A 		31.8
(-1.3)
A 		37
C 12.7
(-3)
A 		40.5
(-0.8)
A 		89.4
(3)
A 		44.3
(-0.5)
A 		53.7
(0.2)
A 		69.5
(1.4)
A 		77
avr 41
(-1) 		47.2
(-0.2) 		73
(3) 		24.6
(-3) 		44.2
(-0.6) 		41.6
(-0.9) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.3
(0.4)
A 		16.4
(0.4)
A 		21.4
(3)
A 		9.7
(-3)
A 		12
B 15.7
(-1.4)
A 		23.2
(3)
A 		13
(-3)
A 		16.6
(-0.9)
A 		10
C 26
(3)
A 		24.8
(2.5)
A 		11.4
(-3)
A 		12.5
(-2.5)
A 		15
avr 19.3
(1.5) 		21.5
(3) 		15.3
(-1.3) 		12.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.5
(-0.4)
A 		17
(2.1)
A 		19.7
(3)
A 		1.6
(-3)
A 		17.3
(2.2)
A 		5.7
(-1.6)
A 		18
B 20.3
(3)
A 		17.7
(1.9)
A 		9.6
(-1.5)
A 		6.1
(-3)
A 		8.8
(-1.9)
A 		11.9
(-0.5)
A 		14
C 4.7
(-3)
A 		12.4
(-0.5)
A 		22.7
(2.8)
A 		8.9
(-1.6)
A 		17.4
(1.1)
A 		23.3
(3)
A 		19
avr 11.5
(0.1) 		15.7
(2.2) 		17.3
(3) 		5.5
(-3) 		14.5
(1.6) 		13.6
(1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.92
Sequence Type Exemplar sequence
Representative Public ID C55C2.1 NCBI
Target Description C55C2.1 /REP_DB=WormBase Gene ID /WP=CE16948 /TR=O01830 /GB=AAB54197.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc-finger transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058600 NCBI Caenorhabditis elegans C55C2.1 (C55C2.1) mRNA, complete cds. 11/11 None
C55C2.1 ENSEMBL cdna:known chromosome:CEL140:I:2568761:2570747:1 gene:C55C2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032497 5/11 Cross Hyb Matching Probes None
SNAP00000032496 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2568760-2570747(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger transcription factor
Ensembl C55C2.1
Entrez Gene 183848 Entrez gene
SwissProt O01830 EMBL-EBI
WormBase CE16948 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54197 Hypothetical protein C55C2.1 [Caenorhabditis elegans] ref|NP_491001.1| C55C2.1 [Caenorhabditis elegans] 2.0E-95
blast CAE60536 Hypothetical protein CBG04163 [Caenorhabditis briggsae] 4.0E-37
blast AAF47394 CG17181-PA [Drosophila melanogaster] ref|NP_612040.1| CG17181-PA [Drosophila melanogaster] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:192307_AT
tcctcctatctcgactaccatagggcaatatgtcgtcgtacgaagttccaccgttccctg
tgctatcaacaccgtttctgctgcaatacatcccgtcgctcatcgaggaagttcagcttg
ccacgatccaaaatcgaacgatggaaaccctagggtttgtcagtgcaaagtttgcgggaa
gcgattcagccgccaatggcttctgcagggacatttgcgaacgcatagtaagttgatggg
tctcgcaactgtttttcttggcggtgatctacattttttcaaaaaaaaattcaatttttc
agccggcgaaaagccattccaatgtgagatctgctcgaaacgattcgctgacaagagcaa
cttgagagcccacatccaaactcactcaggtactaaaccccacaaatgccccagatgcgg
gaagagctttgctctgaagtcgtatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCTATCTCGACTACCATAGGG 691 593 18 Antisense
ATGTCGTCGTACGAAGTTCCACCGT 342 7 47 Antisense
TGCTATCAACACCGTTTCTGCTGCA 616 579 78 Antisense
TCCCGTCGCTCATCGAGGAAGTTCA 385 593 108 Antisense
GGCTTCTGCAGGGACATTTGCGAAC 651 537 215 Antisense
CTCGCAACTGTTTTTCTTGGCGGTG 489 233 259 Antisense
GCCATTCCAATGTGAGATCTGCTCG 349 281 330 Antisense
AACTTGAGAGCCCACATCCAAACTC 345 139 376 Antisense
ACTCACTCAGGTACTAAACCCCACA 454 97 397 Antisense
CCCCACAAATGCCCCAGATGCGGGA 564 261 415 Antisense
GAGCTTTGCTCTGAAGTCGTATCTT 63 389 441 Antisense
Sequence Source Affymetrix Proprietary Database