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[192305_s_at] kinesin-like protein

Description F22F4.3 /REP_DB=WormBase Gene ID /WP=CE07128 /GEN=klp-13 /TR=Q19745 /GB=AAA96219.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=kinesin-like protein
Cluster 6grp_total > 25      4grp_total > 14      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 72.8
(3)
P 		12.6
(-2.4)
A 		5.9
(-3)
A 		68.9
(2.7)
A 		67
B 53.4
(1.3)
P 		35.6
(-1.3)
A 		23.7
(-3)
A 		65.1
(3)
P 		41
C 43
(0.8)
P 		7.9
(-3)
A 		48.3
(1.4)
M 		63.2
(3)
P 		55
avr 56.4
(1.8) 		18.7
(-3) 		26
(-2.1) 		65.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 55.5
(3)
A 		54.2
(2.8)
P 		19.2
(-2.7)
A 		45.1
(1.4)
A 		17.5
(-3)
A 		17.4
(-3)
A 		38
B 68.3
(3)
P 		42.1
(-0.9)
P 		44.7
(-0.5)
A 		45.7
(-0.3)
A 		27.5
(-3)
A 		41.1
(-1)
A 		41
C 34.2
(-0.8)
P 		69.3
(3)
M 		29.1
(-1.4)
A 		14.1
(-3)
A 		30.3
(-1.2)
P 		29.7
(-1.3)
A 		55
avr 52.7
(2.5) 		55.2
(3) 		31
(-1.8) 		35
(-1) 		25.1
(-3) 		29.4
(-2.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.5
(3)
P 		2.7
(-2.7)
A 		1.5
(-3)
A 		10.1
(-0.9)
A 		25
B 17
(3)
P 		8.8
(-1.3)
A 		5.5
(-3)
A 		13.9
(1.4)
P 		12
C 14.2
(1.9)
P 		2.3
(-3)
A 		16.8
(3)
M 		10.7
(0.5)
P 		15
avr 19.2
(3) 		4.6
(-3) 		7.9
(-1.6) 		11.6
(-0.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.2
(-0.6)
A 		19.3
(3)
P 		4.2
(-3)
A 		11.4
(-0.1)
A 		5.3
(-2.6)
A 		4.2
(-3)
A 		15
B 23.8
(3)
P 		14
(-1.6)
P 		10.9
(-3)
A 		12.1
(-2.4)
A 		11.2
(-2.9)
A 		15.3
(-1)
A 		13
C 12.7
(0.2)
P 		21.2
(3)
M 		7.4
(-1.5)
A 		2.8
(-3)
A 		9.8
(-0.7)
P 		9.9
(-0.7)
A 		18
avr 15.6
(1.5) 		18.2
(3) 		7.5
(-3) 		8.8
(-2.3) 		8.8
(-2.3) 		9.8
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192305_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16107
Sequence Type Exemplar sequence
Representative Public ID F22F4.3 NCBI
Target Description F22F4.3 /REP_DB=WormBase Gene ID /WP=CE07128 /GEN=klp-13 /TR=Q19745 /GB=AAA96219.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=kinesin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076600 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-13) (klp-13) mRNA, complete cds. 11/11 None
GENEFINDER00000018355 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5983313:5991907:1 11/11 None
SNAP00000018350 ENSEMBL cdna:SNAP chromosome:CEL140:X:5988308:5991146:1 10/11 None
F22F4.3 ENSEMBL cdna:known chromosome:CEL140:X:5984933:5992061:1 gene:F22F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5985149-5991907(+) 100.0 100.0
Public Domain and Genome References
Gene Title kinesin-like protein
Gene Symbol klp-13
Ensembl F22F4.3
Entrez Gene 180865 Entrez gene
SwissProt Q9NDT1 EMBL-EBI
WormBase CE33056 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96219 Kinesin-like protein protein 13 [Caenorhabditis elegans] ref|NP_509001.2| Kinesin-Like Protein family member (klp-13) [Caenorhabditis elegans] dbj|BAA96455.1| kinesin like protein KLP-13 [Caenorhabditis elegans] 0.0
blast T16140 hypothetical protein F22F4.3 - Caenorhabditis elegans 0.0
blast CAE68832 Hypothetical protein CBG14793 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 9.2E-44
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.7E-29
Pfam IPR001752 EMBL-EBI Kinesin, motor region 7.2E-47
Pfam IPR001752 EMBL-EBI Kinesin, motor region 7.3E-22
Pfam IPR001752 EMBL-EBI Kinesin, motor region 5.1E-15
Pfam IPR001752 EMBL-EBI Kinesin, motor region 4.2E-61
Sequence
Target Sequence 
>C. ELEGANS:192305_S_AT
gtggaactatctgatcaacgaactaaagtggagaaggcactccggaaaggggaggagaat
gcgagtgggctggaatctcgaatgagaagcctggcatccactaatgagcagcgagaagtt
gttaaattgatggtgaagatggctgagatagaagcacaaaaaatttccgcattgtcggat
cttgccatccggggattgatcatggatagaactgatacatctattgcaaagcttcaaaaa
tatgaaatggtggctgataagctgatcgatggaaagctagacgacaatgatcgtaagaaa
cttgaagaagaataccgagtgatcaaaaatcagttccattatcatctgctcccactgaaa
aacattcaaacgacggtctcgtggaattcaatgctgcttccgaaaattattaacaacaac
aacacaatcataatagaggatcgccttatgtctgcctcaaagaaaaagtctgaaatttcc
ctacccctcattgctaatggaagagaaaaatatccgacttcttctgcggaatcaactact
gacgacgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAACTATCTGATCAACGAACTA 202 489 1210 Antisense
GGAGAATGCGAGTGGGCTGGAATCT 165 519 1263 Antisense
ATCTCGAATGAGAAGCCTGGCATCC 709 31 1284 Antisense
GCCTGGCATCCACTAATGAGCAGCG 439 283 1298 Antisense
AATTTCCGCATTGTCGGATCTTGCC 80 175 1371 Antisense
GGATCTTGCCATCCGGGGATTGATC 120 513 1386 Antisense
GAACTGATACATCTATTGCAAAGCT 428 347 1418 Antisense
ATCAGTTCCATTATCATCTGCTCCC 412 29 1538 Antisense
GACGGTCTCGTGGAATTCAATGCTG 423 377 1581 Antisense
TTCAATGCTGCTTCCGAAAATTATT 644 647 1596 Antisense
GCGGAATCAACTACTGACGACGATC 530 293 1735 Antisense
Sequence Source Affymetrix Proprietary Database