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[192301_at] Zinc finger, C2H2 type (2 domains)

Description Y6G8.3 /REP_DB=WormBase Gene ID /WP=CE14840 /TR=O01709 /GB=CAB07491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_total > 77      4grp_total > 22      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.5
(-2.4)
A 		5.3
(-2.6)
A 		4.8
(-3)
A 		11.7
(3)
A 		7
B 14.4
(3)
A 		5.1
(-2)
A 		3.2
(-3)
A 		3.7
(-2.7)
A 		11
C 7.4
(-0.1)
A 		5.5
(-1.5)
A 		3.3
(-3)
A 		11.9
(3)
A 		9
avr 9.1
(3) 		5.3
(-1.3) 		3.8
(-3) 		9.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 7.1
(-2.9)
A 		5
(-3)
A 		7.8
(-2.9)
A 		6.1
(-2.9)
A 		4.6
(-3)
A 		183.7
(3)
P 		179
B 3.5
(-3)
A 		6.1
(-2.9)
A 		3.7
(-3)
A 		6.3
(-2.9)
A 		40
(-1.2)
A 		128.5
(3)
A 		125
C 3
(-3)
A 		4.6
(-2.9)
A 		7.2
(-2.8)
A 		4.1
(-3)
A 		51.5
(-0.9)
A 		138.5
(3)
A 		136
avr 4.5
(-3) 		5.2
(-3) 		6.2
(-2.9) 		5.5
(-3) 		32
(-1.9) 		150.2
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2
(3)
A 		1.2
(-3)
A 		1.3
(-2.3)
A 		1.7
(0.8)
A 		1
B 4.6
(3)
A 		1.3
(-2.1)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		4
C 2.4
(3)
A 		1.6
(-1)
A 		1.2
(-3)
A 		2
(1)
A 		1
avr 3
(3) 		1.4
(-2.1) 		1.1
(-3) 		1.5
(-1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.8
(-2.9)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		1.4
(-3)
A 		44.7
(3)
P 		43
B 1.2
(-3)
A 		2
(-2.9)
A 		0.9
(-3)
A 		1.7
(-2.9)
A 		16.2
(-1)
A 		47.9
(3)
A 		47
C 1.1
(-3)
A 		1.4
(-2.9)
A 		1.8
(-2.9)
A 		0.8
(-3)
A 		16.7
(-0.9)
A 		46.4
(3)
A 		46
avr 1.2
(-3) 		1.7
(-2.9) 		1.5
(-3) 		1.4
(-3) 		11.4
(-1.6) 		46.3
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12722
Sequence Type Exemplar sequence
Representative Public ID Y6G8.3 NCBI
Target Description Y6G8.3 /REP_DB=WormBase Gene ID /WP=CE14840 /TR=O01709 /GB=CAB07491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075055 NCBI Caenorhabditis elegans Y6G8.3 (Y6G8.3) mRNA, complete cds. 11/11 None
SNAP00000042769 ENSEMBL cdna:SNAP chromosome:CEL140:V:17604502:17605361:1 11/11 None
GENEFINDER00000042783 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17602936:17605361:1 11/11 None
Y6G8.3 ENSEMBL cdna:known chromosome:CEL140:V:17604490:17605503:1 gene:Y6G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17604501-17605361(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl Y6G8.3
Entrez Gene 180158 Entrez gene
SwissProt O01709 EMBL-EBI
WormBase CE14840 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 1.0E-129
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 1.0E-124
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 1.0E-105
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 1.0E-101
blast CAA16305 Hypothetical protein Y20C6A.2 [Caenorhabditis elegans] ref|NP_507398.1| Y20C6A.2 [Caenorhabditis elegans] 7.0E-73
blast AAC19207 Hypothetical protein F36F12.8 [Caenorhabditis elegans] ref|NP_503566.1| F36F12.8 [Caenorhabditis elegans] 2.0E-67
Sequence
Target Sequence 
>C. ELEGANS:192301_AT
caaccgtcatcgtcgactattgcacggaaacgagcacacatgcatgatgtgtgatcggaa
actcaacgcaaaggagacgatccgagatcacatgagaaatgagcacaatctgttccaagt
attcacttgtgggtgctgtaactggtcgttctccagcaagagacaactctcggagcacac
gaagtgcattcagggaactggagctccaggagacaccattccaatcgccaagtcctgcaa
tgcaccaggatcacttattcaatcgacaatccaaggaactcctccagtggtgaaaaccgg
tcgcaaacgtggaggctcgttgtcgtcgtcatcatccgtctccacgtccatctcttcccg
tgatgtctccggatcccctccgccaactgaagaagaagccgagcgcaaggtgctatttga
caacgccgtcgacactattctacagagcaagttcttcacttatcagcaaatcactgaagt
cgacacttggatcaaaatcattgaaaatgcaaatactttagcggatacactccagagaat
taataaaactaagaagatcaaagcagaaatgccagccgacaaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCGTCATCGTCGACTATTGCAC 260 187 132 Antisense
GATGTGTGATCGGAAACTCAACGCA 297 409 177 Antisense
GAGCACAATCTGTTCCAAGTATTCA 229 391 232 Antisense
GTGCTGTAACTGGTCGTTCTCCAGC 673 477 264 Antisense
GACAACTCTCGGAGCACACGAAGTG 478 365 293 Antisense
TCGCCAAGTCCTGCAATGCACCAGG 232 599 356 Antisense
ACCGGTCGCAAACGTGGAGGCTCGT 675 57 427 Antisense
AAACGTGGAGGCTCGTTGTCGTCGT 69 127 436 Antisense
AGGTGCTATTTGACAACGCCGTCGA 646 55 539 Antisense
GCAAATACTTTAGCGGATACACTCC 379 317 640 Antisense
AGCAGAAATGCCAGCCGACAAGGAC 231 77 693 Antisense
Sequence Source Affymetrix Proprietary Database