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[192300_at] testis-specific protein TPX1 like

Description T12A7.3 /REP_DB=WormBase Gene ID /WP=CE06435 /TR=Q22421 /GB=CAA98140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX1 like
Cluster 6grp_total > 93      4grp_total > 17      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 2.7
(-3)
A 		2.8
(-3)
A 		16.8
(1.8)
A 		20.2
(3)
A 		18
B 9.2
(1.2)
A 		12.2
(3)
A 		2.4
(-3)
A 		8.6
(0.8)
A 		10
C 3.7
(-3)
A 		9.7
(-1.8)
A 		4.3
(-2.9)
A 		34.7
(3)
A 		31
avr 5.2
(-3) 		8.2
(-1.9) 		7.8
(-2) 		21.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 6.7
(-2.8)
A 		6.6
(-2.8)
A 		5.4
(-3)
A 		31.5
(0.4)
A 		51.8
(3)
A 		14.7
(-1.8)
A 		46
B 1.8
(-3)
A 		3.6
(-2.7)
A 		2.6
(-2.9)
A 		4.7
(-2.5)
A 		33.8
(3)
A 		16.4
(-0.3)
A 		32
C 2.6
(-3)
A 		7.5
(-2.4)
A 		21
(-0.7)
A 		5.8
(-2.6)
A 		49.8
(3)
A 		9.3
(-2.1)
A 		47
avr 3.7
(-3) 		5.9
(-2.7) 		9.7
(-2.1) 		14
(-1.5) 		45.1
(3) 		13.5
(-1.6) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(-2.4)
A 		0.6
(-3)
A 		4.4
(3)
A 		2.9
(0.6)
A 		4
B 2.9
(2.8)
A 		3
(3)
A 		0.6
(-3)
A 		1.8
(0)
A 		2
C 1.2
(-3)
A 		2.8
(-1)
A 		1.5
(-2.6)
A 		5.9
(3)
A 		5
avr 1.7
(-3) 		2.1
(-1.7) 		2.2
(-1.3) 		3.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.3
(-2.5)
A 		1.2
(-3)
A 		8
(-0.2)
A 		15.6
(3)
A 		3.6
(-2)
A 		14
B 0.6
(-3)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		1.3
(-2.7)
A 		13.7
(3)
A 		6.1
(-0.5)
A 		13
C 1
(-3)
A 		2.3
(-2.5)
A 		5.4
(-1.3)
A 		1.2
(-2.9)
A 		16.1
(3)
A 		3.1
(-2.2)
A 		15
avr 0.9
(-3) 		1.9
(-2.6) 		2.4
(-2.4) 		3.5
(-1.9) 		15.1
(3) 		4.3
(-1.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8933
Sequence Type Exemplar sequence
Representative Public ID T12A7.3 NCBI
Target Description T12A7.3 /REP_DB=WormBase Gene ID /WP=CE06435 /TR=Q22421 /GB=CAA98140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069827 NCBI Caenorhabditis elegans T12A7.3 (T12A7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11752957:11755073:-1 11/11 None
T12A7.3 ENSEMBL cdna:known chromosome:CEL140:IV:11752957:11755073:-1 gene:T12A7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004572 2/11 Cross Hyb Matching Probes None
SNAP00000004573 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11752962-11755079(-) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX1 like
Ensembl T12A7.3
Entrez Gene 188436 Entrez gene
SwissProt Q22421 EMBL-EBI
WormBase CE06435 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98140 Hypothetical protein T12A7.3 [Caenorhabditis elegans] ref|NP_502228.1| T12A7.3 [Caenorhabditis elegans] 1.0E-163
blast CAE62123 Hypothetical protein CBG06163 [Caenorhabditis briggsae] 7.0E-46
blast CAE58676 Hypothetical protein CBG01850 [Caenorhabditis briggsae] 5.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.7E-39
Sequence
Target Sequence 
>C. ELEGANS:192300_AT
gatactgcaacaattacgttccgaggggatcacaattggcgtttggaaactttgtcacga
aacgtcacactaaacgagcggcaggttcaaatattaaaaaatttgtgtggaatgccacgc
tagaaagatccgcatattcatttgctcaaaagaatccatcacaacactcttttatccctg
atattggagagaatttattttggcattggtctacaagacctggagactttaataaatacg
ggccaatggctgctctctcgtggataaaagagtttcgcgaaaaattttgggattctaata
ttttaacgaatgatttgtttggaagcggtgttggacatgctactcagatggtttgggctg
acacatatcaaatgggatgtgccgtgagtcacttcaaagaaattcacaaaagaacaggaa
ggcctattacaaagatttgtgtcgtatgtcattattggccaaaaggcaattatctgaatg
agccgatctatttggaaggacctccatgttcaaagtgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTGCAACAATTACGTTCCGAG 541 423 242 Antisense
GTTCCGAGGGGATCACAATTGGCGT 301 437 259 Antisense
GTCACACTAAACGAGCGGCAGGTTC 336 463 305 Antisense
GGAATGCCACGCTAGAAAGATCCGC 20 533 350 Antisense
AAGATCCGCATATTCATTTGCTCAA 26 155 366 Antisense
GAATCCATCACAACACTCTTTTATC 130 331 393 Antisense
AAATACGGGCCAATGGCTGCTCTCT 524 115 475 Antisense
TGGCTGCTCTCTCGTGGATAAAAGA 699 543 488 Antisense
GACATGCTACTCAGATGGTTTGGGC 315 369 575 Antisense
ATGGGATGTGCCGTGAGTCACTTCA 250 49 613 Antisense
AAGGACCTCCATGTTCAAAGTGCGA 44 161 737 Antisense
Sequence Source Affymetrix Proprietary Database