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[192298_at] bone morphogenetic protein 1 like

Description ZC116.3 /REP_DB=WormBase Gene ID /WP=CE06566 /TR=Q20911 /GB=CAA98557.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=bone morphogenetic protein 1 like
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_high_8_8 > 57      6grp_highest_nonorm > 90      6grp_total > 30      4grp_total > 63      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 77.9
(3)
P 		50.8
(-3)
P 		56.4
(-1.8)
P 		65.3
(0.2)
M 		27
B 85.8
(2.2)
P 		43.1
(-2.3)
P 		94
(3)
P 		36
(-3)
P 		58
C 67.3
(0.1)
P 		75.5
(1.3)
P 		86.9
(3)
P 		46.7
(-3)
P 		40
avr 77
(2.6) 		56.5
(-1.6) 		79.1
(3) 		49.3
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 47
(-3)
P 		86.1
(3)
P 		66.6
(0)
P 		68.2
(0.3)
P 		59.7
(-1.1)
P 		70.2
(0.6)
P 		39
B 77.9
(3)
P 		73.9
(2.4)
P 		77.3
(2.9)
P 		54.8
(-0.2)
P 		35
(-3)
P 		60.2
(0.5)
P 		43
C 60.2
(-0.1)
P 		76.8
(2)
P 		63.5
(0.4)
P 		84.4
(3)
P 		37
(-3)
P 		37.2
(-3)
P 		47
avr 61.7
(0.1) 		78.9
(3) 		69.1
(1.3) 		69.1
(1.3) 		43.9
(-3) 		55.9
(-0.9) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 28.3
(3)
P 		11
(-2.6)
P 		14.7
(-1.4)
P 		9.6
(-3)
M 		19
B 27.4
(3)
P 		10.6
(-2.1)
P 		21.8
(1.3)
P 		7.7
(-3)
P 		20
C 22.3
(0.9)
P 		21.7
(0.7)
P 		30.3
(3)
P 		7.9
(-3)
P 		22
avr 26
(3) 		14.4
(-1) 		22.3
(1.7) 		8.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.7
(-3)
P 		30.6
(3)
P 		14.5
(-1.4)
P 		17.3
(-0.6)
P 		18
(-0.5)
P 		17.1
(-0.7)
P 		22
B 27.1
(3)
P 		24.6
(1.8)
P 		18.8
(-0.9)
P 		14.5
(-2.9)
P 		14.2
(-3)
P 		22.4
(0.8)
P 		13
C 22.3
(2.4)
P 		23.4
(3)
P 		16.2
(-0.8)
P 		17
(-0.4)
P 		12
(-3)
P 		12.5
(-2.7)
P 		11
avr 19.4
(-0.5) 		26.2
(3) 		16.5
(-2.1) 		16.3
(-2.2) 		14.7
(-3) 		17.3
(-1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13298
Sequence Type Exemplar sequence
Representative Public ID ZC116.3 NCBI
Target Description ZC116.3 /REP_DB=WormBase Gene ID /WP=CE06566 /TR=Q20911 /GB=CAA98557.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=bone morphogenetic protein 1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073756 NCBI Caenorhabditis elegans ZC116.3 (ZC116.3) mRNA, complete cds. 11/11 A 
SNAP00000036161 ENSEMBL cdna:SNAP chromosome:CEL140:V:12627175:12631284:1 11/11 None
GENEFINDER00000036169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12627190:12631303:1 11/11 None
ZC116.3 ENSEMBL cdna:known chromosome:CEL140:V:12615142:12631284:1 gene:ZC116.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12615141-12631284(+) 99.97 100.0
Public Domain and Genome References
Gene Title bone morphogenetic protein 1 like
Ensembl ZC116.3
Entrez Gene 179729 Entrez gene
SwissProt Q20911 EMBL-EBI
WormBase CE06566 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582384_AT cubilin (intrinsic factor-cobalamin receptor) cfa
CANINE_2:CFA.3631.1.A1_AT cubilin (intrinsic factor-cobalamin receptor) cfa
CANINE_2:CFAAFFX.7812.1.S1_S_AT cubilin (intrinsic factor-cobalamin receptor) cfa
CANINE:1588797_AT Cubilin cfa
DROSOPHILA_2:1641037_AT dm
DROSGENOME1:141481_AT dm
CHICKEN:GGA.14579.1.S1_AT cubilin (intrinsic factor-cobalamin receptor) gga
CHICKEN:GGAAFFX.22672.1.S1_AT cubilin (intrinsic factor-cobalamin receptor) gga
HG-U133_PLUS_2:206775_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-U133A:206775_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-FOCUS:206775_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-U133A_2:206775_AT cubilin (intrinsic factor-cobalamin receptor) hs
U133_X3P:G4557502_3P_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-U95AV2:35416_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-U95AV2:35417_AT cubilin (intrinsic factor-cobalamin receptor) hs
HG-U95C:49857_AT Cubilin (intrinsic factor-cobalamin receptor) hs
HG-U95E:70891_R_AT Cubilin (intrinsic factor-cobalamin receptor) hs
HG-U95D:79919_AT Cubilin (intrinsic factor-cobalamin receptor) hs
MU11KSUBA:AA409718_RC_F_AT cubilin (intrinsic factor-cobalamin receptor) mm
MG-U74AV2:94999_AT cubilin (intrinsic factor-cobalamin receptor) mm
MG-U74AV2:95000_G_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOE430A:1452270_S_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOUSE430A_2:1452270_S_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOUSE430_2:1452270_S_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOE430A:1426990_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOUSE430A_2:1426990_AT cubilin (intrinsic factor-cobalamin receptor) mm
MOUSE430_2:1426990_AT cubilin (intrinsic factor-cobalamin receptor) mm
MU19KSUBC:TC38471_AT PREDICTED: cubilin (intrinsic factor-cobalamin receptor) [Mus musculus], mRNA sequence mm
MU19KSUBC:TC41527_AT PREDICTED: cubilin (intrinsic factor-cobalamin receptor) [Mus musculus], mRNA sequence mm
MU19KSUBC:TC41873_AT PREDICTED: cubilin (intrinsic factor-cobalamin receptor) [Mus musculus], mRNA sequence mm
MU19KSUBC:TC41873_G_AT PREDICTED: cubilin (intrinsic factor-cobalamin receptor) [Mus musculus], mRNA sequence mm
RG-U34A:AF022247_AT cubilin (intrinsic factor-cobalamin receptor) rn
RAE230A:1387037_AT cubilin (intrinsic factor-cobalamin receptor) rn
RAT230_2:1387037_AT cubilin (intrinsic factor-cobalamin receptor) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98952 Hypothetical protein ZC116.3 [Caenorhabditis elegans] emb|CAA98557.1| Hypothetical protein ZC116.3 [Caenorhabditis elegans] ref|NP_506157.1| ZC116.3 [Caenorhabditis elegans] 0.0
blast CAE63948 Hypothetical protein CBG08530 [Caenorhabditis briggsae] 0.0
blast XP_394526 PREDICTED: similar to ENSANGP00000021200 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 6.7E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 2.2E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 8.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-9
Pfam IPR000859 EMBL-EBI CUB 1.4E-6
Pfam IPR000859 EMBL-EBI CUB 7.7E-8
Pfam IPR000859 EMBL-EBI CUB 2.5E-38
Pfam IPR000859 EMBL-EBI CUB 1.4E-5
Pfam IPR000859 EMBL-EBI CUB 7.3E-8
Pfam IPR000859 EMBL-EBI CUB 3.2E-7
Pfam IPR000859 EMBL-EBI CUB 4.1E-6
Pfam IPR000859 EMBL-EBI CUB 1.6E-5
Pfam IPR000859 EMBL-EBI CUB 5.5E-24
Pfam IPR000859 EMBL-EBI CUB 1.7E-13
Pfam IPR000859 EMBL-EBI CUB 2.1E-5
Pfam IPR000859 EMBL-EBI CUB 1.3E-10
Pfam IPR000859 EMBL-EBI CUB 2.2E-21
Pfam IPR000859 EMBL-EBI CUB 1.4E-7
Pfam IPR000859 EMBL-EBI CUB 2.0E-14
Pfam IPR000859 EMBL-EBI CUB 9.3E-25
Pfam IPR000859 EMBL-EBI CUB 5.4E-11
Pfam IPR000859 EMBL-EBI CUB 6.4E-18
Pfam IPR006209 EMBL-EBI EGF-like domain 8.3E-5
Pfam IPR000859 EMBL-EBI CUB 2.2E-21
Pfam IPR000859 EMBL-EBI CUB 1.4E-7
Pfam IPR000859 EMBL-EBI CUB 2.0E-14
Pfam IPR000859 EMBL-EBI CUB 9.3E-25
Pfam IPR000859 EMBL-EBI CUB 5.4E-11
Pfam IPR000859 EMBL-EBI CUB 6.4E-18
Pfam IPR000859 EMBL-EBI CUB 2.2E-21
Pfam IPR000859 EMBL-EBI CUB 1.4E-7
Pfam IPR000859 EMBL-EBI CUB 2.0E-14
Pfam IPR000859 EMBL-EBI CUB 9.3E-25
Pfam IPR000859 EMBL-EBI CUB 5.4E-11
Pfam IPR000859 EMBL-EBI CUB 6.4E-18
Sequence
Target Sequence 
>C. ELEGANS:192298_AT
tgcgattatgattatctcatgctgaaagaaggtgactctaatggaacgtactattgtgga
tcaactctaccaaaagccctaatgacttcgggaaaagatttgacagctttattgaaatca
gatcattcattgaatcatgcaggatatgatgcatcttactacacagttgtcagtgaaaga
gatgatcagattcaatttgctgattcgtatgagttggaaggagtcatttctagtattgga
tatccaaacggctataacaagtcgtatactcaaattttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGATTATGATTATCTCATGCTGA 350 579 11017 Antisense
GAAGGTGACTCTAATGGAACGTACT 507 333 11044 Antisense
GGAACGTACTATTGTGGATCAACTC 96 529 11059 Antisense
GATCAACTCTACCAAAAGCCCTAAT 450 421 11075 Antisense
CTACCAAAAGCCCTAATGACTTCGG 429 225 11083 Antisense
GCAGGATATGATGCATCTTACTACA 483 311 11155 Antisense
GCATCTTACTACACAGTTGTCAGTG 1 309 11167 Antisense
AATTTGCTGATTCGTATGAGTTGGA 329 173 11210 Antisense
AGGAGTCATTTCTAGTATTGGATAT 144 57 11235 Antisense
ATTGGATATCCAAACGGCTATAACA 358 3 11251 Antisense
ACAAGTCGTATACTCAAATTTTCAC 465 111 11273 Antisense
Sequence Source Affymetrix Proprietary Database