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[192297_s_at] viral non-structural protein like

Description B0035.3 /REP_DB=WormBase Gene ID /WP=CE05161 /TR=Q17432 /GB=CAA97408.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=viral non-structural protein like
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 271.9
(-3)
P 		339.5
(-1.8)
P 		375.6
(-1.2)
P 		620
(3)
P 		348
B 292.7
(-3)
P 		526.7
(2.7)
P 		436
(0.5)
P 		540.2
(3)
P 		248
C 349.4
(-3)
P 		411.4
(-1.3)
P 		568.4
(3)
P 		444
(-0.4)
P 		219
avr 304.7
(-3) 		425.9
(0.2) 		460
(1.1) 		534.7
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 688
1 2 3 4 5 6 range
A 290.7
(-3)
P 		300.4
(-2.9)
P 		569
(1)
P 		584.3
(1.2)
P 		612.4
(1.6)
P 		711.9
(3)
P 		421
B 264.1
(-3)
P 		396.8
(-1.5)
P 		455.1
(-0.9)
P 		576
(0.5)
P 		660.7
(1.4)
P 		805.8
(3)
P 		542
C 275.6
(-3)
P 		416.7
(-1.7)
P 		458.2
(-1.4)
P 		409.8
(-1.8)
P 		610.7
(-0)
P 		951.8
(3)
P 		676
avr 276.8
(-3) 		371.3
(-2) 		494.1
(-0.6) 		523.4
(-0.3) 		627.9
(0.9) 		823.2
(3) 		546
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 99
(3)
P 		73.7
(-3)
P 		98.2
(2.8)
P 		90.8
(1.1)
P 		25
B 93.3
(-3)
P 		130.1
(3)
P 		101
(-1.7)
P 		115.1
(0.6)
P 		37
C 115.7
(-1)
P 		118.3
(-0.9)
P 		198.1
(3)
P 		74.9
(-3)
P 		123
avr 102.7
(-1.6) 		107.4
(-0.9) 		132.4
(3) 		93.6
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 53.6
(-3)
P 		106.8
(-0.6)
P 		123.9
(0.2)
P 		148.2
(1.3)
P 		184.8
(3)
P 		173.3
(2.5)
P 		131
B 91.9
(-3)
P 		132.1
(-1.8)
P 		110.5
(-2.5)
P 		152.6
(-1.3)
P 		268.4
(2.1)
P 		300.5
(3)
P 		209
C 102.2
(-2.5)
P 		127.2
(-1.9)
P 		116.6
(-2.1)
P 		82.4
(-3)
P 		197.6
(-0.1)
P 		318.6
(3)
P 		236
avr 82.6
(-3) 		122
(-1.7) 		117
(-1.9) 		127.7
(-1.5) 		216.9
(1.4) 		264.1
(3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192297_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9221
Sequence Type Exemplar sequence
Representative Public ID B0035.3 NCBI
Target Description B0035.3 /REP_DB=WormBase Gene ID /WP=CE05161 /TR=Q17432 /GB=CAA97408.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=viral non-structural protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069726 NCBI Caenorhabditis elegans B0035.3 (B0035.3) mRNA, complete cds. 11/11 None
SNAP00000035832 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11314186:11314938:-1 11/11 None
GENEFINDER00000035855 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11314186:11314938:-1 11/11 None
B0035.3 ENSEMBL cdna:known chromosome:CEL140:IV:11314052:11314988:-1 gene:B0035.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11314191-11314944(-) 100.0 100.0
Public Domain and Genome References
Gene Title viral non-structural protein like
Ensembl B0035.3
Entrez Gene 178044 Entrez gene
SwissProt Q17433 EMBL-EBI
Q17432 EMBL-EBI
WormBase CE05161 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16144.1.S1_AT similar to LRP16 protein cfa
CANINE_2:CFAAFFX.22685.1.S1_S_AT similar to LRP16 protein cfa
HG-U133_PLUS_2:219188_S_AT LRP16 protein hs
HG-U133A:219188_S_AT LRP16 protein hs
HG-U133A_2:219188_S_AT LRP16 protein hs
HU35KSUBA:RC_AA085934_AT LRP16 protein hs
HU35KSUBA:R48644_S_AT LRP16 protein hs
U133_X3P:G13569839_3P_AT LRP16 protein hs
HG-U95C:49159_AT LRP16 protein hs
HG-U95E:91392_AT LRP16 protein hs
U133_X3P:HS2.406888.1.S1_3P_AT LRP16 protein hs
U133_X3P:1562624_3P_AT LRP16 protein hs
HG-U133_PLUS_2:1562624_AT LRP16 protein hs
HG-U133_PLUS_2:1559731_X_AT LRP16 protein hs
HG-U95D:73100_AT LRP16 protein hs
HG-U95D:91202_AT LRP16 protein hs
MOUSE430_2:1419687_AT RIKEN cDNA D930010J01 gene mm
MOUSE430A_2:1419687_AT RIKEN cDNA D930010J01 gene mm
MOE430A:1419687_AT RIKEN cDNA D930010J01 gene mm
MG-U74BV2:116644_AT RIKEN cDNA D930010J01 gene mm
MG-U74BV2:116789_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
MG-U74CV2:137337_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
MOUSE430_2:1459669_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
MOE430B:1459669_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
MU19KSUBB:TC29841_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
MU19KSUBB:TC29841_G_AT RIKEN cDNA D930010J01 gene (D930010J01Rik), mRNA mm
RG-U34C:RC_AI103955_AT LRP16 protein rn
RAE230A:1372158_AT LRP16 protein rn
RAT230_2:1372158_AT LRP16 protein rn
RAE230B:1381774_AT LRP16 protein rn
RAT230_2:1381774_AT LRP16 protein rn
RAE230B:1384304_AT LRP16 protein rn
RAT230_2:1384304_AT LRP16 protein rn
Protein Similarities
Method ID Description E-Value
blast CAA97408 Hypothetical protein B0035.3 [Caenorhabditis elegans] ref|NP_502127.1| B0035.3 [Caenorhabditis elegans] 1.0E-113
blast CAE62052 Hypothetical protein CBG06070 [Caenorhabditis briggsae] 2.0E-93
blast AAH60026 MGC68697 protein [Xenopus laevis] 8.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002589 EMBL-EBI Protein of unknown function Appr-1 3.6E-60
Sequence
Target Sequence 
>C. ELEGANS:192297_S_AT
tttcagaaattccaactctctttgaaaaattcaaggttgccaaaaacgttctgggccgta
tcagtgtctgggatggagatattactaaactttccgtcgacgcaattgtcaatgcagcaa
acagtcgattagctggaggtggtggcgttgatggtgcaattcatcgtgcagctggacgga
agcaactacaggaagaatgccagcaatacaacggatgtgctgtcggagatgctgtcatta
cctctggatgcaatattaatcacatcaaaaaaataatccacacagttggtccacaagtat
atggaaatgtcacagatgaacggcgtgaaaatcttgttgcatgttacagaacatcactag
atattgctatcgagaacgggatgaagagtattgccttctgttgcatttctactggtgtgt
acggttatccaaatgacgatgccgctaaaaccgtcaccaatttcctgaccgagtatcttg
aaaagaatgatacaattgaacggattgtacttgttacattccttgacattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAGAAATTCCAACTCTCTTTGA 170 673 29 Antisense
AACGTTCTGGGCCGTATCAGTGTCT 111 145 73 Antisense
TATTACTAAACTTTCCGTCGACGCA 396 551 108 Antisense
GGAGGTGGTGGCGTTGATGGTGCAA 308 517 163 Antisense
GCAATTCATCGTGCAGCTGGACGGA 62 323 184 Antisense
GATGCTGTCATTACCTCTGGATGCA 345 413 256 Antisense
TAATCCACACAGTTGGTCCACAAGT 685 629 302 Antisense
CCTTCTGTTGCATTTCTACTGGTGT 375 269 422 Antisense
GACGATGCCGCTAAAACCGTCACCA 79 379 463 Antisense
CACCAATTTCCTGACCGAGTATCTT 697 199 483 Antisense
GTACTTGTTACATTCCTTGACATTG 43 461 535 Antisense
Sequence Source Affymetrix Proprietary Database