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[192292_s_at] zinc finger protein /// zinc finger protein

Description C49D10.6 /REP_DB=WormBase Gene ID /WP=CE08847 /GEN=nhr-75 /TR=O16604 /GB=AAC71180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 80      4grp_total > 05      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 6.3
(-1.8)
A 		3.4
(-3)
A 		18.4
(3)
A 		10.5
(-0.2)
A 		15
B 3.2
(-2)
A 		6
(-0.1)
A 		10.4
(3)
A 		1.8
(-3)
A 		9
C 31.3
(-0.1)
A 		8
(-2.4)
A 		1.7
(-3)
A 		62.2
(3)
A 		61
avr 13.6
(-0.5) 		5.8
(-3) 		10.2
(-1.6) 		24.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.3
(-0.7)
A 		11.1
(3)
A 		6.9
(-1.1)
A 		9.5
(1.4)
A 		5
(-3)
A 		7.3
(-0.7)
A 		6
B 11.5
(3)
A 		9.4
(1.7)
A 		6.9
(0.2)
A 		3.1
(-2.1)
A 		3.3
(-2)
A 		1.6
(-3)
A 		10
C 2.9
(-2.7)
A 		7.8
(-1.6)
A 		3.3
(-2.6)
A 		28.3
(3)
A 		1.7
(-3)
A 		13
(-0.5)
A 		27
avr 7.2
(-0.7) 		9.4
(0.6) 		5.7
(-1.6) 		13.6
(3) 		3.3
(-3) 		7.3
(-0.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.3
(-0.7)
A 		0.7
(-3)
A 		4.8
(3)
A 		1.5
(-1.8)
A 		4
B 1
(-1.2)
A 		1.5
(0.3)
A 		2.4
(3)
A 		0.4
(-3)
A 		2
C 10.3
(2.9)
A 		2.3
(-2)
A 		0.6
(-3)
A 		10.5
(3)
A 		10
avr 4.5
(3) 		1.5
(-3) 		2.6
(-0.8) 		4.1
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.9
(3)
A 		1.5
(-2.8)
A 		2.4
(-0.6)
A 		1.5
(-2.8)
A 		1.8
(-2)
A 		3
B 4
(3)
A 		3.1
(1.4)
A 		1.7
(-1.1)
A 		0.8
(-2.6)
A 		1.3
(-1.8)
A 		0.6
(-3)
A 		3
C 1.1
(-2.3)
A 		2.4
(-0.8)
A 		0.8
(-2.7)
A 		5.7
(3)
A 		0.5
(-3)
A 		4.3
(1.4)
A 		5
avr 2.2
(0.3) 		3.1
(3) 		1.3
(-2.4) 		3
(2.7) 		1.1
(-3) 		2.2
(0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192292_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4667
Sequence Type Exemplar sequence
Representative Public ID C49D10.6 NCBI
Target Description C49D10.6 /REP_DB=WormBase Gene ID /WP=CE08847 /GEN=nhr-75 /TR=O16604 /GB=AAC71180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062270(11), NM_062275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062270 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-72) (nhr-72) mRNA, complete cds. 11/11 A 
NM_062275 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-75) (nhr-75) mRNA, complete cds. 11/11 A 
SNAP00000008440 ENSEMBL cdna:SNAP chromosome:CEL140:II:3867152:3868236:1 11/11 None
GENEFINDER00000008449 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3866890:3868236:1 11/11 None
SNAP00000028370 ENSEMBL cdna:SNAP chromosome:CEL140:II:3849089:3850315:-1 11/11 None
GENEFINDER00000028375 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3849089:3850897:-1 11/11 None
C17A2.8 ENSEMBL cdna:known chromosome:CEL140:II:3849089:3850718:-1 gene:C17A2.8 11/11 A 
C49D10.6 ENSEMBL cdna:known chromosome:CEL140:II:3866791:3868236:1 gene:C49D10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3866789-3868235(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
zinc finger protein
Gene Symbol nhr-72
nhr-75
Ensembl C17A2.8
C49D10.6
Entrez Gene 191721 Entrez gene
191724 Entrez gene
SwissProt O16537 EMBL-EBI
O16604 EMBL-EBI
WormBase CE34695 Wormbase
CE08847 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71180 Nuclear hormone receptor family protein 75 [Caenorhabditis elegans] ref|NP_494676.1| Nuclear Hormone Receptor family member (nhr-75) [Caenorhabditis elegans] 0.0
blast AAC71180 Nuclear hormone receptor family protein 75 [Caenorhabditis elegans] ref|NP_494676.1| Nuclear Hormone Receptor family member (nhr-75) [Caenorhabditis elegans] 1.0E-173
blast AAB66029 Nuclear hormone receptor family protein 72 [Caenorhabditis elegans] ref|NP_494671.2| Nuclear Hormone Receptor family member (nhr-72) [Caenorhabditis elegans] 1.0E-171
blast AAB66029 Nuclear hormone receptor family protein 72 [Caenorhabditis elegans] ref|NP_494671.2| Nuclear Hormone Receptor family member (nhr-72) [Caenorhabditis elegans] 1.0E-169
blast AAB66029 Nuclear hormone receptor family protein 72 [Caenorhabditis elegans] ref|NP_494671.2| Nuclear Hormone Receptor family member (nhr-72) [Caenorhabditis elegans] 1.0E-168
blast AAB66029 Nuclear hormone receptor family protein 72 [Caenorhabditis elegans] ref|NP_494671.2| Nuclear Hormone Receptor family member (nhr-72) [Caenorhabditis elegans] 1.0E-161
blast AAC71180 Nuclear hormone receptor family protein 75 [Caenorhabditis elegans] ref|NP_494676.1| Nuclear Hormone Receptor family member (nhr-75) [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.2E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.2E-6
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.2E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-17
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.3E-14
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.2E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.5E-16
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.7E-10
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.3E-14
Sequence
Target Sequence 
>C. ELEGANS:192292_S_AT
gatctgctgcaattttatctggaagaagttgagaagacaatgagtcaaaaaaggagaaat
gtgtcaaagaacgttctccttgcaaaatcattcaatgagctgatgataataactgctcat
gaacacggttctgcaatggaagcatgtattgactgtccgggggtagatcacttggaacag
gaagatctcaaggttttactgaaatattttcaattcgccaatgtatggattgactctgtt
cgtgcttattcggtctcggatatagattgttttaaagaagttccaggacgagatgacaga
ctaactgaattcctccaacaagtcaagtcaactctgggctccgcattcgctgagttgaag
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGCTGCAATTTTATCTGGAAG 269 419 430 Antisense
ATAACTGCTCATGAACACGGTTCTG 473 25 538 Antisense
TGAACACGGTTCTGCAATGGAAGCA 57 573 549 Antisense
GGAAGCATGTATTGACTGTCCGGGG 460 531 567 Antisense
ACTGTCCGGGGGTAGATCACTTGGA 213 91 581 Antisense
GGAAGATCTCAAGGTTTTACTGAAA 425 529 609 Antisense
ATGGATTGACTCTGTTCGTGCTTAT 289 51 654 Antisense
CGTGCTTATTCGGTCTCGGATATAG 635 245 670 Antisense
ACAGACTAACTGAATTCCTCCAACA 278 109 725 Antisense
AATTCCTCCAACAAGTCAAGTCAAC 17 179 737 Antisense
GCTCCGCATTCGCTGAGTTGAAGCT 110 299 767 Antisense
Sequence Source Affymetrix Proprietary Database