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[192288_at] calmodulin calcium-binding sites

Description K03A1.4 /REP_DB=WormBase Gene ID /WP=CE04712 /TR=Q21165 /GB=AAA83326.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calmodulin calcium-binding sites
Cluster 6grp_high1_10_10 > 01      4grp_highest_8_8 > 55      4grp_high_8_8 > 20      6grp_total > 24      4grp_total > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 167.1
(-0.4)
P 		170.7
(-0.2)
P 		126.2
(-3)
P 		220.7
(3)
P 		95
B 157.3
(-1.4)
P 		163
(-0.6)
P 		145.1
(-3)
P 		189.9
(3)
P 		45
C 191.5
(2.3)
P 		146.8
(-1)
P 		120
(-3)
P 		201.1
(3)
P 		81
avr 172
(0.4) 		160.2
(-0.6) 		130.4
(-3) 		203.9
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 156.2
(3)
P 		138
(1)
P 		106
(-2.4)
P 		148.2
(2.1)
P 		100.8
(-3)
P 		117.9
(-1.1)
P 		55
B 153.6
(3)
P 		103.3
(-0.1)
P 		144
(2.4)
P 		97
(-0.5)
P 		55.5
(-3)
P 		72.7
(-1.9)
P 		98
C 223
(3)
P 		126.9
(-1)
P 		152.6
(0.1)
P 		99.7
(-2.1)
A 		100.6
(-2.1)
P 		78.9
(-3)
P 		144
avr 177.6
(3) 		122.7
(-0.6) 		134.2
(0.2) 		115
(-1.1) 		85.6
(-3) 		89.8
(-2.7) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 60.8
(3)
P 		37
(-2)
P 		33
(-2.9)
P 		32.3
(-3)
P 		29
B 50.2
(3)
P 		40.3
(-0.6)
P 		33.6
(-3)
P 		40.5
(-0.5)
P 		17
C 63.4
(3)
P 		42.2
(-1.3)
P 		41.8
(-1.4)
P 		33.9
(-3)
P 		30
avr 58.1
(3) 		39.8
(-1.9) 		36.1
(-2.9) 		35.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 28.8
(-1.7)
P 		49.1
(3)
P 		23.1
(-3)
P 		37.6
(0.3)
P 		30.4
(-1.3)
P 		28.7
(-1.7)
P 		26
B 53.4
(3)
P 		34.4
(-0.7)
P 		35
(-0.6)
P 		25.7
(-2.4)
P 		22.5
(-3)
P 		27.1
(-2.1)
P 		31
C 82.7
(3)
P 		38.7
(-1.2)
P 		38.8
(-1.2)
P 		20.1
(-3)
A 		32.5
(-1.8)
P 		26.4
(-2.4)
P 		63
avr 55
(3) 		40.7
(-0.1) 		32.3
(-1.9) 		27.8
(-2.9) 		28.5
(-2.8) 		27.4
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16556
Sequence Type Exemplar sequence
Representative Public ID K03A1.4 NCBI
Target Description K03A1.4 /REP_DB=WormBase Gene ID /WP=CE04712 /TR=Q21165 /GB=AAA83326.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calmodulin calcium-binding sites
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076827 NCBI Caenorhabditis elegans K03A1.4 (K03A1.4) mRNA, complete cds. 11/11 None
K03A1.4 ENSEMBL cdna:known chromosome:CEL140:X:7296298:7301298:-1 gene:K03A1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013870 6/11 Cross Hyb Matching Probes None
SNAP00000013865 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013873 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7296296-7301297(-) 100.0 100.0
Public Domain and Genome References
Gene Title calmodulin calcium-binding sites
Ensembl K03A1.4
Entrez Gene 186916 Entrez gene
SwissProt Q21165 EMBL-EBI
WormBase CE04712 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83326 Hypothetical protein K03A1.4 [Caenorhabditis elegans] ref|NP_509228.1| K03A1.4 [Caenorhabditis elegans] 1.0E-150
blast CAE65869 Hypothetical protein CBG11013 [Caenorhabditis briggsae] 2.0E-83
blast P13868 Calmodulin-1 (CaM-1) gb|AAA74405.1| calmodulin 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.4E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.4E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.9E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:192288_AT
cttgtccaacagtgatcttcgatcccgtcgtcacttcctcacattgttcaaacttcttga
aatggattcgctaaaagctgctgtcgactactcaaagacactattttcccttttttttcg
gttttgtgcatctttatgtggcgttttcccatatccaaagcacgccgcaacacaaatcac
tgccagcaattgcaaaaacaaaatagaagaatacaaacgagcattcaactttttcgatgc
aaacaacgatggccggatcacaatagacgaactggagaaggctatgcaaaaatgtggtca
gaaaccaaccaaattggagttgcgtcttatcatgtaccacggggacaatgatcaaaacgg
ggtcattacatttgacgagtttgcccatttgatgaacggtactgcatcgatgaaccagta
tacgtacgaccagcttcgagagcagttcgatatgtttgataaggacaaagatgggttcat
tgagaaaatggaaatgctttcaattgtgcgtgagctgtcgctccaagcttcctttccacg
tcaagtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCCAACAGTGATCTTCGATCC 83 215 189 Antisense
TAAAAGCTGCTGTCGACTACTCAAA 11 641 260 Antisense
GTGCATCTTTATGTGGCGTTTTCCC 314 481 314 Antisense
CGTTTTCCCATATCCAAAGCACGCC 400 245 330 Antisense
CCGCAACACAAATCACTGCCAGCAA 417 263 353 Antisense
GGAGTTGCGTCTTATCATGTACCAC 633 517 504 Antisense
ACATTTGACGAGTTTGCCCATTTGA 390 101 556 Antisense
GAACGGTACTGCATCGATGAACCAG 535 347 582 Antisense
GTACGACCAGCTTCGAGAGCAGTTC 179 459 612 Antisense
AATTGTGCGTGAGCTGTCGCTCCAA 542 179 690 Antisense
AAGCTTCCTTTCCACGTCAAGTGGT 705 135 713 Antisense
Sequence Source Affymetrix Proprietary Database