[Home] | [Total List]

[192287_at] Cell division protein

Description W09C5.2 /REP_DB=WormBase Gene ID /WP=CE20165 /GEN=unc-59 /TR=Q9U334 /GB=CAB63329.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cell division protein
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_high_8_8 > 52      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 233
(-0)
P 		360.2
(3)
P 		325.8
(2.2)
P 		109.6
(-3)
A 		251
B 272.6
(2.1)
P 		304.2
(3)
P 		270.8
(2)
P 		100.3
(-3)
P 		204
C 258
(1)
P 		280.4
(1.5)
P 		347.4
(3)
P 		74.6
(-3)
A 		273
avr 254.5
(1.4) 		314.9
(3) 		314.7
(3) 		94.8
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 338.4
(-1.6)
P 		260
(-2.6)
P 		288.2
(-2.3)
P 		233.6
(-3)
P 		394.9
(-0.8)
P 		672.5
(3)
P 		439
B 273.8
(-2.3)
P 		309.5
(-1.9)
P 		209.5
(-3)
P 		300.3
(-2)
P 		505.3
(0.2)
P 		771.8
(3)
P 		562
C 354.9
(-1.6)
P 		240.3
(-2.6)
P 		196.7
(-2.9)
P 		190.4
(-3)
P 		449.6
(-0.8)
P 		884
(3)
P 		694
avr 322.4
(-2) 		269.9
(-2.6) 		231.5
(-3) 		241.4
(-2.9) 		449.9
(-0.6) 		776.1
(3) 		545
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 84.8
(3)
P 		78.2
(2.4)
P 		85.2
(3)
P 		16
(-3)
A 		69
B 86.9
(3)
P 		75.1
(1.9)
P 		62.7
(0.8)
P 		21.4
(-3)
P 		66
C 85.4
(1)
P 		80.6
(0.8)
P 		121.1
(3)
P 		12.6
(-3)
A 		109
avr 85.7
(2.7) 		78
(2) 		89.7
(3) 		16.7
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 62.4
(-2.8)
P 		92.5
(-1.1)
P 		62.8
(-2.8)
P 		59.3
(-3)
P 		119.2
(0.4)
P 		163.7
(3)
P 		104
B 95.3
(-1.9)
P 		103
(-1.7)
P 		50.9
(-3)
P 		79.5
(-2.3)
P 		205.3
(0.9)
P 		287.8
(3)
P 		237
C 131.6
(-0.8)
P 		73.3
(-2.2)
P 		50.1
(-2.7)
P 		38.3
(-3)
P 		145.5
(-0.5)
P 		295.9
(3)
P 		258
avr 96.4
(-1.7) 		89.6
(-1.9) 		54.6
(-3) 		59
(-2.9) 		156.7
(0.1) 		249.1
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1586
Sequence Type Exemplar sequence
Representative Public ID W09C5.2 NCBI
Target Description W09C5.2 /REP_DB=WormBase Gene ID /WP=CE20165 /GEN=unc-59 /TR=Q9U334 /GB=CAB63329.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cell division protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060987 NCBI Caenorhabditis elegans UNCoordinated family member (unc-59) (unc-59) mRNA, complete cds. 11/11 None
SNAP00000012963 ENSEMBL cdna:SNAP chromosome:CEL140:I:13637352:13641389:1 11/11 None
GENEFINDER00000013008 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13637352:13641389:1 11/11 None
W09C5.2.2 ENSEMBL cdna:known chromosome:CEL140:I:13637344:13641556:1 gene:W09C5.2 11/11 None
W09C5.2.1 ENSEMBL cdna:known chromosome:CEL140:I:13637346:13641613:1 gene:W09C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13637282-13641320(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cell division protein
Gene Symbol unc-59
Ensembl W09C5.2
Entrez Gene 173233 Entrez gene
SwissProt Q9U334 EMBL-EBI
WormBase CE20165 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19142.1.S1_S_AT similar to cell division cycle 10 isoform 1 cfa
CANINE_2:CFAAFFX.5764.1.S1_S_AT similar to cell division cycle 10 isoform 1 cfa
DROSOPHILA_2:1627280_S_AT peanut dm
DROSGENOME1:154792_AT peanut dm
CHICKEN:GGA.4636.1.S1_AT septin 7 gga
HG-U133A:213151_S_AT septin 7 hs
HG-U133A_2:213151_S_AT septin 7 hs
HG-FOCUS:213151_S_AT septin 7 hs
HG-U133_PLUS_2:213151_S_AT septin 7 hs
HU35KSUBC:RC_D52420_S_AT septin 7 hs
HUGENEFL:S72008_AT septin 7 hs
U133_X3P:HS.184326.1.S1_3P_A_AT septin 7 hs
HG-U95AV2:32175_AT septin 7 hs
HG-U133_PLUS_2:217721_AT Septin 7 hs
HG-U133A_2:217721_AT Septin 7 hs
HG-U133A:217721_AT Septin 7 hs
HU35KSUBA:RC_AA398708_AT Septin 7 hs
HU35KSUBD:RC_R40891_F_AT Septin 7 hs
U133_X3P:HS.184326.0.S2_3P_AT Septin 7 hs
HG-U95B:43525_AT Septin 7 hs
HG-U133_PLUS_2:1565823_AT Septin 7 hs
HG-U133_PLUS_2:244508_AT Septin 7 hs
HG-U133B:244508_AT Septin 7 hs
HG-U95C:53568_AT Septin 7 hs
HG-U95C:54219_AT Septin 7 hs
HU35KSUBC:RC_AA280300_AT Septin 7 hs
U133_X3P:HS2.396503.1.A1_3P_AT Septin 7 hs
U133_X3P:HS.191346.0.A1_3P_AT Septin 7 hs
MOE430A:1454610_AT septin 7 mm
MOUSE430_2:1454610_AT septin 7 mm
MOUSE430A_2:1454610_AT septin 7 mm
MOE430A:1437995_X_AT septin 7 mm
MOUSE430_2:1437995_X_AT septin 7 mm
MOUSE430A_2:1437995_X_AT septin 7 mm
MU11KSUBB:MSA.11147.0_S_AT septin 7 mm
MG-U74AV2:98905_AT septin 7 mm
MOE430B:1438911_AT MKIAA4020 protein mm
MOUSE430_2:1438911_AT MKIAA4020 protein mm
MU19KSUBB:TC34691_AT MKIAA4020 protein mm
MU19KSUBB:TC34691_G_AT MKIAA4020 protein mm
RAE230A:1387436_AT septin 7 rn
RAT230_2:1387436_AT septin 7 rn
RG-U34B:RC_AI009652_AT Septin 7 rn
RG-U34C:RC_AI104487_AT Septin 7 rn
YEAST_2:1775634_AT Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7049 cell cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63329 Hypothetical protein W09C5.2 [Caenorhabditis elegans] ref|NP_493388.1| UNCoordinated family member (unc-59) [Caenorhabditis elegans] 0.0
blast CAE72588 Hypothetical protein CBG19777 [Caenorhabditis briggsae] 0.0
blast CAE72940 Hypothetical protein CBG20268 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000038 EMBL-EBI Cell division/GTP binding protein 1.0E-126
Pfam IPR000038 EMBL-EBI Cell division/GTP binding protein 2.7E-36
Pfam IPR000038 EMBL-EBI Cell division/GTP binding protein 5.3E-92
Sequence
Target Sequence 
>C. ELEGANS:192287_AT
aatgattttctaacacttcgtgatatgattattcgaactaatttgattgatatgattgat
gttacacgtaatgttcattatgagaatttccgattccgtcaaatggagggtttgccgaag
aatgagaagaatcgtgatccattcactcatcttgaggaggagagacgtcagaaggagcaa
gatttggatgagaagcggaatacgttggagaaggtattcactgagaaaacgtctgctcgt
aagaagcgaagtgatgagagaatgtctgctctcgaagagctcgaacaacaaaataagcag
aaaatcgatgcgaaacgtgcagaaatcattcgtctccgccacgagattagtgaacttaaa
aatggaaatctgacgtcatcacagacatcgttggctatgtacaatgagaataatcactcg
cagaattccacgttgaactccaccacaaaatcgagtcccccgccgacgagtgccacgtca
tcatcgtctggaacaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATTTTCTAACACTTCGTGATA 489 163 853 Antisense
GAGAATTTCCGATTCCGTCAAATGG 301 359 934 Antisense
GAATCGTGATCCATTCACTCATCTT 522 329 981 Antisense
TTCACTGAGAAAACGTCTGCTCGTA 663 683 1069 Antisense
AGAGAATGTCTGCTCTCGAAGAGCT 557 67 1109 Antisense
ACGTGCAGAAATCATTCGTCTCCGC 2 95 1167 Antisense
TTCGTCTCCGCCACGAGATTAGTGA 453 695 1181 Antisense
GACGTCATCACAGACATCGTTGGCT 4 379 1224 Antisense
ATAATCACTCGCAGAATTCCACGTT 192 25 1262 Antisense
CGCAGAATTCCACGTTGAACTCCAC 176 255 1271 Antisense
ACGTCATCATCGTCTGGAACAATGA 351 93 1327 Antisense
Sequence Source Affymetrix Proprietary Database