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[192286_s_at] Yesat transport protein WEB1 like

Description T01G1.3 /REP_DB=WormBase Gene ID /WP=CE16320 /TR=O45604 /GB=CAB07274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yesat transport protein WEB1 like
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 75      6grp_total > 50      4grp_total > 62      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 894.8
(3)
P 		679.9
(-1.3)
P 		790.7
(0.9)
P 		597.3
(-3)
P 		298
B 968.2
(3)
P 		709.9
(-1.5)
P 		857.7
(1.1)
P 		620.1
(-3)
P 		348
C 850.1
(3)
P 		719.8
(-0.4)
P 		716.4
(-0.5)
P 		623.4
(-3)
P 		227
avr 904.4
(3) 		703.2
(-1.2) 		788.3
(0.6) 		613.6
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 839.5
(-0.8)
P 		1011.7
(3)
P 		969.1
(2.1)
P 		884.3
(0.2)
P 		738.3
(-3)
P 		860
(-0.3)
P 		273
B 825.4
(0.4)
P 		737.6
(-1.2)
P 		693.1
(-2)
P 		968.8
(3)
P 		636.8
(-3)
P 		767.3
(-0.6)
P 		332
C 946.7
(2)
P 		754.4
(-3)
P 		986.1
(3)
P 		787.5
(-2.1)
P 		760.4
(-2.8)
P 		757.5
(-2.9)
P 		232
avr 870.5
(2.6) 		834.6
(1.3) 		882.8
(3) 		880.2
(2.9) 		711.8
(-3) 		794.9
(-0.1) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 325.8
(3)
P 		147.6
(-1.5)
P 		206.7
(0)
P 		87.4
(-3)
P 		238
B 308.8
(3)
P 		175.3
(-1.5)
P 		198.7
(-0.7)
P 		132.1
(-3)
P 		177
C 281.4
(3)
P 		207
(0.5)
P 		249.7
(1.9)
P 		105.1
(-3)
P 		176
avr 305.3
(3) 		176.6
(-0.9) 		218.4
(0.4) 		108.2
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 154.8
(-3)
P 		359.8
(3)
P 		211.1
(-1.4)
P 		224.3
(-1)
P 		222.8
(-1)
P 		209.4
(-1.4)
P 		205
B 287.2
(3)
P 		245.5
(0.9)
P 		168.3
(-3)
P 		256.6
(1.5)
P 		258.7
(1.6)
P 		286.1
(2.9)
P 		119
C 350.9
(3)
P 		230.2
(-0.8)
P 		251
(-0.1)
P 		158.4
(-3)
P 		246
(-0.3)
P 		253.6
(-0)
P 		193
avr 264.3
(1.8) 		278.5
(3) 		210.1
(-3) 		213.1
(-2.7) 		242.5
(-0.2) 		249.7
(0.5) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192286_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8584
Sequence Type Exemplar sequence
Representative Public ID T01G1.3 NCBI
Target Description T01G1.3 /REP_DB=WormBase Gene ID /WP=CE16320 /TR=O45604 /GB=CAB07274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yesat transport protein WEB1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069743 NCBI Caenorhabditis elegans T01G1.3 (T01G1.3) mRNA, complete cds. 11/11 None
SNAP00000007362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11366083:11369408:-1 10/11 None
T01G1.3 ENSEMBL cdna:known chromosome:CEL140:IV:11365589:11371742:-1 gene:T01G1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11365914-11371729(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yesat transport protein WEB1 like
Ensembl T01G1.3
Entrez Gene 178060 Entrez gene
SwissProt O45604 EMBL-EBI
WormBase CE16320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07274 Hypothetical protein T01G1.3 [Caenorhabditis elegans] emb|CAB07223.1| Hypothetical protein T01G1.3 [Caenorhabditis elegans] ref|NP_502144.1| T01G1.3 [Caenorhabditis elegans] 0.0
blast CAE62060 Hypothetical protein CBG06078 [Caenorhabditis briggsae] 0.0
blast XP_858718 PREDICTED: similar to SEC31-like 1 isoform 2 isoform 8 [Canis familiaris] 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.8E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.4E-8
Sequence
Target Sequence 
>C. ELEGANS:192286_S_AT
atcctcctccaatggctttgaagcctaccactgttgcccagccaaagcaaaatgtgatgg
aaatcaattggaaacctatagaaactgcccaagctcctggtggaatgatgactgggcagc
agttgaacggatttgcaggagggtatcaaaatgtgatgactaatggaattcaaggaatga
gtattcacaatcaacaatcatctgcagcgtcttcagcttttccatctccaaactcttatc
aacagagaccggcttctgcagcatccgttgtagctccagctccaatccaattatcaccgg
aagatgagaaaattattgaacccattaatacattggctcagtgtatcattgaaaatgcca
gaattcaggctagaatggaaaaagctcaggatttgagaactcgtattcaggcagagctct
caccgcgtcttgctgcgaataggttgtctcccgaatcgaagcagcatctaactcatatgg
cttactttgtttccatgcggcagattcgtgaagctcaagcagttgtggcacaaatggcac
ggaattcaggagattttgttgagatttcgtcgttccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTCCTCCAATGGCTTTGAAGCC 241 37 2648 Antisense
CTATAGAAACTGCCCAAGCTCCTGG 486 215 2723 Antisense
ACAATCATCTGCAGCGTCTTCAGCT 319 115 2841 Antisense
TTCCATCTCCAAACTCTTATCAACA 94 701 2867 Antisense
TCAACAGAGACCGGCTTCTGCAGCA 643 629 2886 Antisense
GAACTCGTATTCAGGCAGAGCTCTC 495 349 3044 Antisense
TCACCGCGTCTTGCTGCGAATAGGT 611 625 3067 Antisense
ATAGGTTGTCTCCCGAATCGAAGCA 295 19 3086 Antisense
GCAGCATCTAACTCATATGGCTTAC 622 313 3108 Antisense
TGGCTTACTTTGTTTCCATGCGGCA 131 545 3125 Antisense
TTGTTGAGATTTCGTCGTTCCTTCC 308 707 3203 Antisense
Sequence Source Affymetrix Proprietary Database