[Home] | [Total List]

[192284_at] 7TM chemoreceptor, srg family

Description C18F10.5 /REP_DB=WormBase Gene ID /WP=CE00782 /TR=SW:P46571 /GB=AAC47052.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_total > 30      4grp_total > 29      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 60
(2.1)
A 		52.5
(0.7)
A 		32.1
(-3)
A 		64.9
(3)
A 		33
B 49.8
(3)
A 		30.5
(-3)
A 		40
(-0)
A 		42
(0.6)
A 		19
C 66.4
(1.4)
A 		66.3
(1.4)
A 		50.6
(-3)
A 		72
(3)
A 		21
avr 58.7
(2.7) 		49.8
(-0.1) 		40.9
(-3) 		59.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 6.2
(-3)
A 		40.6
(1.7)
P 		50.1
(3)
A 		39
(1.5)
A 		47.3
(2.6)
A 		6.9
(-2.9)
A 		44
B 42.2
(0.1)
A 		60.8
(3)
A 		34.7
(-1.1)
A 		52
(1.6)
A 		25.8
(-2.5)
A 		22.8
(-3)
A 		38
C 34.2
(-1.3)
A 		63.8
(1.5)
A 		80.2
(3)
A 		50.1
(0.2)
A 		38.4
(-0.9)
A 		15.7
(-3)
A 		65
avr 27.5
(-1.1) 		55.1
(3) 		55
(3) 		47
(1.8) 		37.2
(0.3) 		15.1
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.8
(3)
A 		11.4
(-1.7)
A 		8.4
(-3)
A 		9.5
(-2.5)
A 		13
B 15.9
(3)
A 		7.5
(-3)
A 		9.3
(-1.7)
A 		9
(-1.9)
A 		8
C 22
(3)
A 		19.1
(1.2)
A 		17.6
(0.3)
A 		12.1
(-3)
A 		10
avr 19.9
(3) 		12.7
(-1.5) 		11.8
(-2) 		10.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.1
(-3)
A 		14.5
(3)
P 		10.9
(1.4)
A 		9.9
(0.9)
A 		14.3
(2.9)
A 		1.7
(-2.7)
A 		13
B 14.7
(0.2)
A 		20.2
(3)
A 		8.4
(-3)
A 		13.8
(-0.3)
A 		10.5
(-1.9)
A 		8.5
(-2.9)
A 		12
C 12.7
(-0.1)
A 		19.5
(2.6)
A 		20.4
(3)
A 		10.1
(-1.1)
A 		12.4
(-0.2)
A 		5.3
(-3)
A 		15
avr 9.5
(-1) 		18.1
(3) 		13.2
(0.7) 		11.3
(-0.2) 		12.4
(0.3) 		5.2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6620
Sequence Type Exemplar sequence
Representative Public ID C18F10.5 NCBI
Target Description C18F10.5 /REP_DB=WormBase Gene ID /WP=CE00782 /TR=SW:P46571 /GB=AAC47052.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065966 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-2) (srg-2) mRNA, complete cds. 11/11 None
SNAP00000044233 ENSEMBL cdna:SNAP chromosome:CEL140:III:6258529:6259869:-1 11/11 None
GENEFINDER00000044244 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6258529:6263801:-1 11/11 None
C18F10.5 ENSEMBL cdna:known chromosome:CEL140:III:6258529:6260154:-1 gene:C18F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6258527-6260018(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-2
Ensembl C18F10.5
Entrez Gene 182793 Entrez gene
SwissProt P46571 EMBL-EBI
WormBase CE33032 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47052 Serpentine receptor, class g (gamma) protein 2 [Caenorhabditis elegans] ref|NP_498367.2| Serpentine Receptor, class G (gamma) family member (srg-2) [Caenorhabditis elegans] sp|P46571|SRG2_CAEEL Serpentine receptor class gamma-2 (Protein srg-2) 0.0
blast 2123261AB chemosensory receptor 0.0
blast 2123261AE chemosensory receptor 1.0E-150
blast CAE70736 Hypothetical protein CBG17481 [Caenorhabditis briggsae] 1.0E-137
blast AAC47052 Serpentine receptor, class g (gamma) protein 2 [Caenorhabditis elegans] ref|NP_498367.2| Serpentine Receptor, class G (gamma) family member (srg-2) [Caenorhabditis elegans] sp|P46571|SRG2_CAEEL Serpentine receptor class gamma-2 (Protein srg-2) 1.0E-129
blast 2123261AB chemosensory receptor 1.0E-126
blast AAK84567 Serpentine receptor, class g (gamma) protein 5 [Caenorhabditis elegans] ref|NP_498369.2| Serpentine Receptor, class G (gamma) family member (srg-5) [Caenorhabditis elegans] sp|P54127|SRG5_CAEEL Serpentine receptor class gamma-5 (Protein srg-5) 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 2.3E-117
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 7.7E-83
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.7E-114
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.3E-34
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 5.6E-77
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498367.2 7 34-56,68-90,159-176,181-203,207-229,242-264,274-296
C18F10.5 7 34-56,68-90,159-176,181-203,207-229,242-264,274-296
SNAP00000044233 4 60-82,112-134,147-169,179-201
GENEFINDER00000044244 13 29-48,61-83,98-117,149-171,198-220,240-262,272-294,381-398,471-488,493-515,519-541,554-576,586-608
Sequence
Target Sequence 
>C. ELEGANS:192284_AT
acaacaacaccttcattgtgctcaaccaataattcaaatactcttgacagtaaaccgtat
gtcctgtgtagttattccctggaagcatagtcaggtttggaaatcttttatgaaatatgc
tattgcattagtaattctgactccgtttttgttcatttggaatattataatttcgaagaa
actcccggtctacacatttggagggttttatattggatacgagagagttgttatttgggc
aacaatgacgttgttcatgcttattctccgtgctatcacaatagttatcacagctgtatg
cacattcataaccgttctccgactaacccgaatgagcaaacgacttgtttcttctgaacg
tactctttgcattgcctcattcttgatatcttcgtgttttctaggaacagctgccgcaga
aagcctatttgctttccaagtggtgcgaacatcaacgagcatcagttacttccttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAACACCTTCATTGTGCTCAA 210 113 237 Antisense
GTATGTCCTGTGTAGTTATTCCCTG 684 455 293 Antisense
ATTCTGACTCCGTTTTTGTTCATTT 523 9 370 Antisense
TTCGAAGAAACTCCCGGTCTACACA 28 695 408 Antisense
GACGTTGTTCATGCTTATTCTCCGT 630 377 483 Antisense
TATGCACATTCATAACCGTTCTCCG 194 657 533 Antisense
GTTCTCCGACTAACCCGAATGAGCA 696 441 550 Antisense
TTCTGAACGTACTCTTTGCATTGCC 111 693 588 Antisense
GCATTGCCTCATTCTTGATATCTTC 684 307 605 Antisense
GCCTATTTGCTTTCCAAGTGGTGCG 55 283 659 Antisense
AACGAGCATCAGTTACTTCCTTCTA 396 145 690 Antisense
Sequence Source Affymetrix Proprietary Database