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[192267_at] transcription factor

Description K10D3.3 /REP_DB=WormBase Gene ID /WP=CE06172 /GEN=taf-7.2 /TR=Q21417 /GB=CAA99885.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor
Cluster 6grp_total > 98      4grp_total > 38      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 17
(3)
A 		11.3
(0.1)
A 		5.4
(-3)
A 		10.5
(-0.4)
A 		12
B 38.1
(3)
A 		8.7
(-3)
A 		9.4
(-2.9)
A 		12.3
(-2.3)
A 		29
C 88.6
(3)
P 		31.8
(-1)
A 		3.8
(-3)
A 		47.3
(0.1)
A 		85
avr 47.9
(3) 		17.3
(-1.4) 		6.2
(-3) 		23.4
(-0.5) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 40.1
(-3)
A 		45
(-2.9)
A 		70.2
(-2.6)
A 		68.5
(-2.6)
A 		439.6
(2.2)
P 		498.9
(3)
P 		459
B 70.8
(-2.3)
A 		14.8
(-3)
A 		50.2
(-2.6)
P 		86.3
(-2.1)
A 		401.5
(1.8)
P 		501.1
(3)
P 		486
C 49.2
(-2.5)
A 		13.6
(-3)
A 		12.7
(-3)
A 		65.6
(-2.3)
A 		295.5
(0.5)
P 		499
(3)
P 		486
avr 53.4
(-2.6) 		24.5
(-3) 		44.4
(-2.7) 		73.5
(-2.4) 		378.9
(1.5) 		499.7
(3) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 6.2
(3)
A 		2.5
(-1.6)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		5
B 12.2
(3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		2.6
(-2.8)
A 		10
C 29.3
(3)
P 		9.1
(-1.3)
A 		1.3
(-3)
A 		8
(-1.6)
A 		28
avr 15.9
(3) 		4.6
(-1.7) 		1.6
(-3) 		4
(-2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 7.4
(-3)
A 		16
(-2.6)
A 		15.3
(-2.6)
A 		17.4
(-2.5)
A 		132.7
(3)
P 		121.5
(2.5)
P 		125
B 24.6
(-2.4)
A 		4.9
(-3)
A 		12.2
(-2.8)
P 		22.9
(-2.4)
A 		163.1
(2.2)
P 		186.9
(3)
P 		182
C 18.2
(-2.5)
A 		4.1
(-3)
A 		3.2
(-3)
A 		13.2
(-2.6)
A 		95.6
(0.4)
P 		167.1
(3)
P 		164
avr 16.7
(-2.7) 		8.3
(-3) 		10.2
(-2.9) 		17.8
(-2.6) 		130.5
(1.9) 		158.5
(3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.692
Sequence Type Exemplar sequence
Representative Public ID K10D3.3 NCBI
Target Description K10D3.3 /REP_DB=WormBase Gene ID /WP=CE06172 /GEN=taf-7.2 /TR=Q21417 /GB=CAA99885.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059618 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-11.2) (taf-11.2) mRNA, complete cds. 11/11 None
SNAP00000021174 ENSEMBL cdna:SNAP chromosome:CEL140:I:7140880:7142306:1 11/11 None
GENEFINDER00000021180 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7140880:7142306:1 11/11 None
K10D3.3 ENSEMBL cdna:known chromosome:CEL140:I:7140630:7142334:1 gene:K10D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7140560-7142237(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor
Gene Symbol taf-11.2
Ensembl K10D3.3
Entrez Gene 172451 Entrez gene
SwissProt Q21417 EMBL-EBI
WormBase CE06172 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99885 Hypothetical protein K10D3.3 [Caenorhabditis elegans] ref|NP_492019.1| TAF (TBP-associated transcription factor) family member (taf-11.2) [Caenorhabditis elegans] 1.0E-151
blast CAA99885 Hypothetical protein K10D3.3 [Caenorhabditis elegans] ref|NP_492019.1| TAF (TBP-associated transcription factor) family member (taf-11.2) [Caenorhabditis elegans] 1.0E-135
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 2.0E-37
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 3.0E-37
blast CAE68546 Hypothetical protein CBG14378 [Caenorhabditis briggsae] 5.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR006809 EMBL-EBI TAFII28-like protein 1.7E-53
Pfam IPR006809 EMBL-EBI TAFII28-like protein 1.7E-53
Sequence
Target Sequence 
>C. ELEGANS:192267_AT
aagcctcaagttgtcttctatcttccaaatgataatacttctacaattgtttttaaatca
ttttggatgcacaacggaaagcccattagagaaatcgttgacggacagggaactagtcaa
ttcactgcttgtttcaaagaatctgttcgggaggaagagcagcgaagaaaaagattacgc
gaggaaaaagaaaaagaaaacgcgatgagagctgcttctccggaaattccagccggtccc
ccacccacaaaacggcaaattctggagcaagaagagaaggaaattattctattgaaaaat
caagttctcgttgccaacttctcacaagaacaaattgaacgatacgaggtttatagaaaa
tcatcgtttaaaaagtccacaatcaaacgtcttatcaatgaattcactggaggaattgac
cttggaaaaaaggtagatattgcagtagctggattggcaaaagtgttggttggcgaaatt
gttgaagaagctcttgatatcagagatttggatgaaaaagaagcaaaagaaccactccag
ccacatcacattcgtcaggcatatcttcgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTCAAGTTGTCTTCTATCTTC 706 147 376 Antisense
GGATGCACAACGGAAAGCCCATTAG 17 513 440 Antisense
GGAACTAGTCAATTCACTGCTTGTT 585 529 484 Antisense
AAACGCGATGAGAGCTGCTTCTCCG 473 125 573 Antisense
GCTTCTCCGGAAATTCCAGCCGGTC 74 307 589 Antisense
CCCACCCACAAAACGGCAAATTCTG 86 259 615 Antisense
TTCTCGTTGCCAACTTCTCACAAGA 85 693 680 Antisense
AAGTCCACAATCAAACGTCTTATCA 461 157 748 Antisense
GAAGCAAAAGAACCACTCCAGCCAC 120 341 895 Antisense
TCCAGCCACATCACATTCGTCAGGC 615 589 911 Antisense
CATTCGTCAGGCATATCTTCGTCTT 129 217 924 Antisense
Sequence Source Affymetrix Proprietary Database