[Home] | [Total List]

[192266_s_at] heat shock protein 70

Description C12C8.1 /REP_DB=WormBase Gene ID /WP=CE08110 /GEN=hsp-70 /TR=O45246 /GB=CAB03871.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=heat shock protein 70
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 69      6grp_total > 77      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5807
1 2 3 4 range
A 1567.2
(-1.5)
P 		70.7
(-3)
P 		547.1
(-2.5)
P 		5878.1
(3)
P 		5807
B 1723.7
(-1)
P 		90.5
(-3)
P 		457.8
(-2.6)
P 		5096.6
(3)
P 		5006
C 1519.1
(-1.4)
P 		125.1
(-3)
P 		501.2
(-2.6)
P 		5446.9
(3)
P 		5322
avr 1603.3
(-1.3) 		95.4
(-3) 		502
(-2.5) 		5473.9
(3) 		5379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9105
1 2 3 4 5 6 range
A 202.2
(-3)
P 		226.2
(-3)
P 		730.3
(-2.6)
P 		1390.9
(-2.1)
P 		1888.5
(-1.7)
P 		7991.5
(3)
P 		7789
B 155.9
(-3)
P 		216.6
(-3)
P 		697.3
(-2.6)
P 		995.3
(-2.4)
P 		2356.1
(-1.6)
P 		9260.8
(3)
P 		9105
C 188.7
(-3)
P 		227.7
(-3)
P 		788.7
(-2.6)
P 		1213.4
(-2.3)
P 		1957.7
(-1.7)
P 		8642.1
(3)
P 		8453
avr 182.3
(-3) 		223.5
(-3) 		738.8
(-2.6) 		1199.9
(-2.3) 		2067.4
(-1.7) 		8631.5
(3) 		8449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1071
1 2 3 4 range
A 570.6
(0.9)
P 		15.4
(-3)
P 		143
(-2.1)
P 		860.4
(3)
P 		845
B 549.7
(-0)
P 		22.4
(-3)
P 		106.1
(-2.5)
P 		1086.1
(3)
P 		1064
C 502.9
(0.2)
P 		36
(-3)
P 		174.7
(-2.1)
P 		918.4
(3)
P 		882
avr 541.1
(0.3) 		24.6
(-3) 		141.3
(-2.2) 		955
(3) 		930

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3416
1 2 3 4 5 6 range
A 37.3
(-3)
P 		80.4
(-2.9)
P 		159
(-2.6)
P 		352.8
(-2)
P 		569.9
(-1.3)
P 		1945.7
(3)
P 		1908
B 54.2
(-3)
P 		72.1
(-3)
P 		169.3
(-2.8)
P 		263.6
(-2.6)
P 		957.2
(-1.4)
P 		3453.3
(3)
P 		3399
C 70
(-3)
P 		69.5
(-3)
P 		200.7
(-2.7)
P 		244
(-2.6)
P 		633.5
(-1.8)
P 		2893
(3)
P 		2824
avr 53.8
(-3) 		74
(-3) 		176.3
(-2.7) 		286.8
(-2.5) 		720.2
(-1.5) 		2764
(3) 		2710
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192266_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1372
Sequence Type Exemplar sequence
Representative Public ID C12C8.1 NCBI
Target Description C12C8.1 /REP_DB=WormBase Gene ID /WP=CE08110 /GEN=hsp-70 /TR=O45246 /GB=CAB03871.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=heat shock protein 70
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060084 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-70) (hsp-70) mRNA, complete cds. 11/11 None
SNAP00000040479 ENSEMBL cdna:SNAP chromosome:CEL140:I:9328535:9330604:-1 11/11 None
GENEFINDER00000040486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9328535:9330604:-1 11/11 None
C12C8.1 ENSEMBL cdna:known chromosome:CEL140:I:9328484:9330634:-1 gene:C12C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9328465-9330535(-) 100.0 100.0
Public Domain and Genome References
Gene Title heat shock protein 70
Gene Symbol hsp-70
Ensembl C12C8.1
Entrez Gene 172757 Entrez gene
SwissProt O45246 EMBL-EBI
WormBase CE08110 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638872_AT Heat shock protein 68 dm
DROSGENOME1:143197_AT Heat shock protein 68 dm
Protein Similarities
Method ID Description E-Value
blast CAB03871 Hypothetical protein C12C8.1 [Caenorhabditis elegans] ref|NP_492485.1| Heat Shock Protein family member (hsp-70) [Caenorhabditis elegans] 0.0
blast CAE74314 Hypothetical protein CBG22024 [Caenorhabditis briggsae] 0.0
blast CAB05508 Hypothetical protein F44E5.5 [Caenorhabditis elegans] emb|CAB05507.1| Hypothetical protein F44E5.4 [Caenorhabditis elegans] ref|NP_496510.1| F44E5.5 [Caenorhabditis elegans] ref|NP_496509.1| F44E5.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192266_S_AT
tcagcctggtgtctctattcaagtatacgaaggagaacgtgctatgactcgagataatca
tcgtcttggaacatttgaattaactggaatcccaccagctccacgaggagttccacaagt
cgatgtaacgtttgatattgatgcaaatggaattctcaatgtatcagctgccgataaatc
aactggtagatcaaacagaattacaattcgcaatgagaagggacgactctctcaagctga
tattgatagaatggtcaatgaagcaaaacagtttgaaagagaagacgcagcacaacgaga
tcgaattagctcgcgtaatcaattagaagcgtatgcattccaagttaagcaggctctcga
agaacatggatcactgttatcagcagaagatgcaaaacgtgcaaaagatgcagttgaaga
tacccttcgttggatggaacgtaatacattagcggataaagatgaaattgaagcaaagga
caaagagttaaagtctatttgtcaagatattttaacaaaaatgcatcaacaagaagccca
atcaggttccggatgcggcaacccaggatctggtggattccattccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCTGGTGTCTCTATTCAAGTA 122 625 1317 Antisense
GACTCGAGATAATCATCGTCTTGGA 208 375 1362 Antisense
GCTCCACGAGGAGTTCCACAAGTCG 127 299 1414 Antisense
GAATTCTCAATGTATCAGCTGCCGA 259 325 1466 Antisense
GAAGACGCAGCACAACGAGATCGAA 654 339 1597 Antisense
GAGATCGAATTAGCTCGCGTAATCA 709 395 1613 Antisense
GCATTCCAAGTTAAGCAGGCTCTCG 618 307 1651 Antisense
GAAGATACCCTTCGTTGGATGGAAC 103 339 1732 Antisense
CAAGAAGCCCAATCAGGTTCCGGAT 590 153 1846 Antisense
GATGCGGCAACCCAGGATCTGGTGG 53 415 1868 Antisense
GGATCTGGTGGATTCCATTCCAGCA 336 511 1882 Antisense
Sequence Source Affymetrix Proprietary Database