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[192265_at]

Description K04A8.7 /REP_DB=WormBase Gene ID /WP=CE11712 /TR=Q94254 /GB=AAC48053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposon reverse transcriptase
Cluster 6grp_total > 09      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 23.2
(2.7)
A 		24.4
(3)
A 		3
(-3)
A 		7
(-1.9)
A 		21
B 19
(3)
A 		4.5
(-3)
A 		19
(3)
A 		5.3
(-2.7)
A 		15
C 8.4
(-3)
A 		25.3
(-1.2)
A 		11.4
(-2.7)
A 		65.5
(3)
A 		57
avr 16.9
(-0.6) 		18.1
(-0.2) 		11.1
(-3) 		25.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 38
(3)
A 		4.5
(-2.9)
A 		3.8
(-3)
A 		20.4
(-0.1)
A 		14.9
(-1.1)
A 		5.5
(-2.7)
A 		34
B 2.8
(-3)
A 		23
(3)
A 		4.5
(-2.5)
A 		4.9
(-2.4)
A 		15.6
(0.8)
A 		9.9
(-0.9)
A 		20
C 27.6
(3)
A 		1.9
(-3)
A 		25.8
(2.6)
A 		21.5
(1.6)
A 		2.7
(-2.8)
A 		8.8
(-1.4)
A 		26
avr 22.8
(3) 		9.8
(-2.3) 		11.4
(-1.7) 		15.6
(0.1) 		11.1
(-1.8) 		8.1
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.5
(3)
A 		5.3
(0.5)
A 		0.8
(-3)
A 		1
(-2.8)
A 		8
B 6.1
(3)
A 		1.1
(-3)
A 		4.4
(1)
A 		1.1
(-3)
A 		5
C 2.8
(-3)
A 		7.3
(0.3)
A 		4
(-2.1)
A 		11
(3)
A 		8
avr 5.8
(3) 		4.6
(0.3) 		3.1
(-3) 		4.4
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7
(3)
A 		1.6
(-2.2)
A 		0.8
(-3)
A 		5.2
(1.3)
A 		4.5
(0.6)
A 		1.3
(-2.5)
A 		6
B 1
(-3)
A 		7.7
(3)
A 		1.1
(-2.9)
A 		1.3
(-2.7)
A 		6.3
(1.7)
A 		3.7
(-0.6)
A 		7
C 10.2
(3)
A 		0.6
(-3)
A 		6.6
(0.8)
A 		4.3
(-0.7)
A 		0.9
(-2.8)
A 		2.9
(-1.6)
A 		10
avr 6.1
(3) 		3.3
(-1.8) 		2.8
(-2.7) 		3.6
(-1.3) 		3.9
(-0.8) 		2.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11304
Sequence Type Exemplar sequence
Representative Public ID K04A8.7 NCBI
Target Description K04A8.7 /REP_DB=WormBase Gene ID /WP=CE11712 /TR=Q94254 /GB=AAC48053.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposon reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072263 NCBI Caenorhabditis elegans K04A8.7 (K04A8.7) mRNA, complete cds. 11/11 None
K04A8.7 ENSEMBL cdna:known chromosome:CEL140:V:6557566:6558457:-1 gene:K04A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6557565-6558818(-) 86.95 100.0
Public Domain and Genome References
Ensembl K04A8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504664 K04A8.7 [Caenorhabditis elegans] 1.0E-158
blast AAF60603 Hypothetical protein Y46C8AL.6 [Caenorhabditis elegans] ref|NP_500443.2| Y46C8AL.6 [Caenorhabditis elegans] 1.0E-92
blast NP_500227 Y69A2AR.10 [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.2E-20
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:192265_AT
aacactatctaactctaaacatgcagaatgtggtgtcccgcaagggtcagtcttggcgcc
tcttcttttcgacgacttgaaactttacaccgatataccgagtaattcaagcaatagtca
tcacctacaaaaagcaattgaaattatagttcagtggtcaaaaaccacaaaactagcgct
aaacaatgataaaacggtatgcatatcactaggaaaaaatacgacagatttccagtatac
tatagaaaacagcccaattgtccgaaatactgttgttagagatttagggtttcaaattga
tttgaatcttagcttctcttcgcattggaaaaaagcattagtgcatgcaaagagtatgat
ccatcaaatcttcttgaactattgtagcaaaaatacgagactccacactctgctctacaa
aacttttgtgaggcccatactaaaatatggtactgaaataagtagtccctcgaaaaaaca
agacattaaagcaattgaacccgtacaaaactctttcactagaaaattgtacagtagaca
gaaaggaaaatatattcgaacggatgatcccgagtgcagttcaacgagacagtctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTATCTAACTCTAAACATGCA 596 135 504 Antisense
GAATGTGGTGTCCCGCAAGGGTCAG 46 333 529 Antisense
GCCTCTTCTTTTCGACGACTTGAAA 482 281 561 Antisense
GACGACTTGAAACTTTACACCGATA 178 377 574 Antisense
AAACAGCCCAATTGTCCGAAATACT 227 129 750 Antisense
TTTGAATCTTAGCTTCTCTTCGCAT 681 665 804 Antisense
AAAATACGAGACTCCACACTCTGCT 450 133 893 Antisense
CACTCTGCTCTACAAAACTTTTGTG 594 197 909 Antisense
TGAACCCGTACAAAACTCTTTCACT 308 573 999 Antisense
AACGGATGATCCCGAGTGCAGTTCA 621 143 1062 Antisense
GTGCAGTTCAACGAGACAGTCTTTT 340 481 1077 Antisense
Sequence Source Affymetrix Proprietary Database