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[192264_at]

Description W09H1.2 /REP_DB=WormBase Gene ID /WP=CE16572 /TR=O45900 /GB=CAB04955.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Core histones H2A, H2B, H3 and H4
Cluster 4grp_high_8_8 > 06      6grp_total > 53      4grp_total > 10      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 6
(-3)
A 		35
(0.1)
A 		13.5
(-2.2)
A 		61.9
(3)
P 		56
B 31.5
(0)
P 		27.9
(-0.8)
P 		17.7
(-3)
A 		45.3
(3)
P 		28
C 29.6
(-2.1)
A 		18
(-3)
A 		29.5
(-2.1)
P 		91.5
(3)
P 		74
avr 22.4
(-2.7) 		27
(-2.1) 		20.2
(-3) 		66.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 1.3
(-3)
A 		4.3
(-2.5)
A 		40.7
(3)
A 		27.9
(1.1)
A 		12.6
(-1.3)
A 		16.8
(-0.6)
A 		39
B 48.1
(3)
P 		3
(-3)
A 		19.3
(-0.8)
A 		8.8
(-2.2)
A 		13.1
(-1.7)
A 		22
(-0.5)
A 		45
C 5.7
(-2.8)
A 		18.7
(0.2)
A 		30.8
(3)
A 		4.7
(-3)
A 		27.1
(2.1)
A 		17.1
(-0.1)
A 		26
avr 18.4
(-0.3) 		8.7
(-3) 		30.3
(3) 		13.8
(-1.6) 		17.6
(-0.5) 		18.6
(-0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-3)
A 		7.6
(1.7)
A 		3.5
(-1.9)
A 		9.1
(3)
P 		7
B 10.1
(3)
P 		6.9
(-0.2)
P 		4.1
(-3)
A 		9.7
(2.6)
P 		6
C 9.8
(-0.3)
A 		5.2
(-3)
A 		10.3
(0)
P 		15.4
(3)
P 		10
avr 7.4
(-1.4) 		6.6
(-2.3) 		6
(-3) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.5
(-2.1)
A 		8.9
(3)
A 		7.1
(1.8)
A 		3.8
(-0.5)
A 		4.1
(-0.3)
A 		9
B 16.7
(3)
P 		1
(-3)
A 		4.7
(-1.6)
A 		2.3
(-2.5)
A 		5.3
(-1.4)
A 		8.2
(-0.2)
A 		16
C 2.1
(-2.1)
A 		5.7
(0.6)
A 		7.8
(2.2)
A 		0.9
(-3)
A 		8.8
(3)
A 		5.7
(0.6)
A 		8
avr 6.3
(1.9) 		2.7
(-3) 		7.1
(3) 		3.4
(-2) 		6
(1.5) 		6
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3382
Sequence Type Exemplar sequence
Representative Public ID W09H1.2 NCBI
Target Description W09H1.2 /REP_DB=WormBase Gene ID /WP=CE16572 /TR=O45900 /GB=CAB04955.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Core histones H2A, H2B, H3 and H4
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010986 ENSEMBL cdna:SNAP chromosome:CEL140:II:13183346:13183741:1 11/11 None
GENEFINDER00000010992 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13183346:13183741:1 11/11 None
W09H1.2 ENSEMBL cdna:pseudogene chromosome:CEL140:II:13183346:13183741:1 gene:W09H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13183342-13183738(+) 100.0 100.0
Public Domain and Genome References
Ensembl W09H1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26320 hypothetical protein W09H1.2 - Caenorhabditis elegans 2.0E-67
blast CAB05834 Hypothetical protein ZK131.7 [Caenorhabditis elegans] emb|CAB05833.1| Hypothetical protein ZK131.3 [Caenorhabditis elegans] emb|CAB05831.1| Hypothetical protein ZK131.2 [Caenorhabditis elegans] emb|CAA97411.1| Hypothetical protein B0035.10 [Caenorhabditis elegans] emb|CAA92733.1| Hypothetical protein F22B3.2 [Caenorhabditis elegans] emb|CAB07653.1| Hypothetical protein T10C6.13 [Caenorhabditis elegans] emb|CAB05209.1| Hypothetical protein F54E12.1 [Caenorhabditis elegans] emb|CAB04057.1| Hypothetical protein F08G2.3 [Caenorhabditis elegans] gb|AAC05102.1| Histone protein 32 [Caenorhabditis elegans] gb|AAK84514.1| Histone protein 49 [Caenorhabditis elegans] gb|AAF98226.1| Histone protein 17 [Caenorhabditis elegans] gb|AAF98231.1| Histone protein 27 [Caenorhabditis elegans] emb|CAA33644.1| Histone protein [Caenorhabditis elegans] gb|AAB00650.1| Histone protein 59 [Caenorhabditis elegans] gb|AAC48033.1| Histone protein 6 [Caenorhabditis elegans] ref|NP_505292.1| HIStone family member (his-27) [Caenorhabditis elegans] ref|NP_505297.1| HIStone family member (his-17) [Caenorhabditis elegans] ref|NP_496890.1| HIStone family member (his-13) [Caenorhabditis elegans] ref|NP_505199.1| HIStone family member (his-6) [Caenorhabditis elegans] ref|NP_501204.1| F55G1.2 [Caenorhabditis elegans] ref|NP_502138.1| HIStone family member (his-55) [Caenorhabditis elegans] ref|NP_502153.1| HIStone family member (his-63) [Caenorhabditis elegans] ref|NP_496899.1| HIStone family member (his-42) [Caenorhabditis elegans] ref|NP_505276.1| HIStone family member (his-49) [Caenorhabditis elegans] ref|NP_502134.1| HIStone family member (his-45) [Caenorhabditis elegans] ref|NP_507033.1| HIStone family member (his-2) [Caenorhabditis elegans] ref|NP_501407.1| HIStone family member (his-32) [Caenorhabditis elegans] ref|NP_496895.1| HIStone family member (his-25) [Caenorhabditis elegans] ref|NP_496894.1| HIStone family member (his-9) [Caenorhabditis elegans] gb|AAG50235.1| histone H3 [Caenorhabditis elegans] pir||HSKW3 histone H3 - Caenorhabditis elegans 2.0E-34
blast T34322 hypothetical protein K03A1.1 - Caenorhabditis elegans sp|Q10460|YB21_CAEEL Hypothetical histone 3-like protein K03A1.1 in chromosome X 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:192264_AT
accagcgcacaacagttcgttcaattatgaaccaactggaaaaacaacttcaggctggca
gcagaagaaacgcggcaccagaagaaacgaatcccagctgtacaggtgaaaacagtgaat
tttcaacaacaaaaaacagtttacagactttgaatcttctcatccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGCGCACAACAGTTCGTTCAAT 105 87 23 Antisense
GCGCACAACAGTTCGTTCAATTATG 67 289 27 Antisense
GTTCGTTCAATTATGAACCAACTGG 126 443 37 Antisense
GGAAAAACAACTTCAGGCTGGCAGC 157 527 60 Antisense
AAACAACTTCAGGCTGGCAGCAGAA 594 127 64 Antisense
GGCAGCAGAAGAAACGCGGCACCAG 656 533 79 Antisense
GAAACGCGGCACCAGAAGAAACGAA 446 357 89 Antisense
GGCACCAGAAGAAACGAATCCCAGC 462 535 96 Antisense
GAAACGAATCCCAGCTGTACAGGTG 76 359 106 Antisense
GAATCCCAGCTGTACAGGTGAAAAC 403 329 111 Antisense
ACAGACTTTGAATCTTCTCATCCGC 337 109 165 Antisense
Sequence Source Affymetrix Proprietary Database