[Home] | [Total List]

[192259_s_at] unc-7-like protein

Description F22F4.2 /REP_DB=WormBase Gene ID /WP=CE07127 /GEN=inx-3 /TR=SW:Q19746 /GB=AAA96220.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=unc-7-like protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 94      6grp_total > 58      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 699.1
(3)
P 		461.8
(0.2)
P 		190.6
(-3)
P 		238.8
(-2.4)
P 		509
B 758.7
(3)
P 		357.6
(-1.6)
P 		264.2
(-2.7)
P 		240.4
(-3)
P 		518
C 715.4
(3)
P 		392.7
(-0.5)
P 		244.6
(-2.1)
P 		158.4
(-3)
P 		557
avr 724.4
(3) 		404
(-0.8) 		233.1
(-2.8) 		212.5
(-3) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1071
1 2 3 4 5 6 range
A 544.4
(-1)
P 		384.9
(-2)
P 		252.1
(-2.9)
P 		237.3
(-3)
P 		243.9
(-3)
P 		1140.2
(3)
P 		903
B 546.1
(-0.9)
P 		427.9
(-1.6)
P 		275.4
(-2.5)
P 		192.2
(-3)
P 		299.8
(-2.4)
P 		1196.4
(3)
P 		1004
C 541.1
(-1.1)
P 		423.4
(-1.8)
P 		267.1
(-2.7)
P 		217.7
(-3)
P 		265.5
(-2.7)
P 		1262.7
(3)
P 		1045
avr 543.9
(-1) 		412.1
(-1.8) 		264.9
(-2.7) 		215.7
(-3) 		269.7
(-2.7) 		1199.8
(3) 		984
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 254.6
(3)
P 		100.3
(-1.2)
P 		49.8
(-2.6)
P 		35
(-3)
P 		220
B 241.9
(3)
P 		88.3
(-1.8)
P 		61.2
(-2.7)
P 		51.2
(-3)
P 		191
C 236.8
(3)
P 		112.9
(-0.5)
P 		85.2
(-1.3)
P 		26.7
(-3)
P 		210
avr 244.4
(3) 		100.5
(-1.2) 		65.4
(-2.2) 		37.6
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 100.4
(-1.8)
P 		136.9
(-0.8)
P 		54.9
(-3)
P 		60.2
(-2.9)
P 		73.6
(-2.5)
P 		277.6
(3)
P 		223
B 190
(-0.9)
P 		142.4
(-1.6)
P 		66.9
(-2.8)
P 		50.9
(-3)
P 		121.8
(-1.9)
P 		446.1
(3)
P 		395
C 200.6
(-0.5)
P 		129.2
(-1.6)
P 		68
(-2.6)
P 		43.8
(-3)
P 		85.9
(-2.3)
P 		422.7
(3)
P 		379
avr 163.7
(-1) 		136.2
(-1.5) 		63.3
(-2.8) 		51.6
(-3) 		93.8
(-2.2) 		382.1
(3) 		331
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192259_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16234
Sequence Type Exemplar sequence
Representative Public ID F22F4.2 NCBI
Target Description F22F4.2 /REP_DB=WormBase Gene ID /WP=CE07127 /GEN=inx-3 /TR=SW:Q19746 /GB=AAA96220.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=unc-7-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076601 NCBI Caenorhabditis elegans INneXin family member (inx-3) (inx-3) mRNA, complete cds. 11/11 A 
SNAP00000018352 ENSEMBL cdna:SNAP chromosome:CEL140:X:5996127:5997844:1 11/11 None
GENEFINDER00000018354 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5996127:5997844:1 11/11 None
F22F4.2.2 ENSEMBL cdna:known chromosome:CEL140:X:5996114:5998209:1 gene:F22F4.2 11/11 None
F22F4.2.1 ENSEMBL cdna:known chromosome:CEL140:X:5996114:5998201:1 gene:F22F4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5995022-5997844(+) 100.0 100.0
Public Domain and Genome References
Gene Title unc-7-like protein
Gene Symbol inx-3
Ensembl F22F4.2
Entrez Gene 180866 Entrez gene
SwissProt Q19746 EMBL-EBI
WormBase CE33055 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSGENOME1:145441_R_AT shaking B dm
DROSOPHILA_2:1639408_A_AT shaking B dm
DROSGENOME1:143291_AT shaking B dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96220 Innexin protein 3 [Caenorhabditis elegans] ref|NP_509002.2| INneXin family member (inx-3) [Caenorhabditis elegans] sp|Q19746|INX3_CAEEL Innexin-3 gb|AAB09670.1| embryonic membrane protein 0.0
blast T16141 hypothetical protein F22F4.2 - Caenorhabditis elegans 0.0
blast CAE68849 Hypothetical protein CBG14811 [Caenorhabditis briggsae] emb|CAE68833.1| Hypothetical protein CBG14794 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509002.2 4 27-49,101-123,191-213,280-302
F22F4.2.2 4 27-49,101-123,191-213,280-302
F22F4.2.1 4 27-49,101-123,191-213,280-302
SNAP00000018352 4 27-49,101-123,191-213,280-302
GENEFINDER00000018354 4 27-49,101-123,191-213,280-302
Sequence
Target Sequence 
>C. ELEGANS:192259_S_AT
ttctctggggattccacacgtttgccgatctgtatgcaggacgtgaatggcaagattctg
gagtgtttccacgtgtcacactttgcgacttctctgtcagaaagctggctaacgtgcatc
gttacacagtccaatgtgtgctcatgatcaatatgttcaacgaaaagatctacttgttta
tctggttctggtttgtcttcgtactcatcaccacctttatcaacaccctgtgcaccatct
accgcttgagttttgatagctcccgccacaactatatcagatctcttttgagtggaccag
taaacaatttcaaggacgagaaggcaatgattgcaagctttgccaacaacggactcaagc
aagatggtgtgctccttatgagatttattgacgatcatgcaggagcaatggtgaccaaag
aaatttgcgaggagctcttcaagaagcacggtgaaaaccttcaacacaaccgcgacttcc
accatggccattccacaaaatcaacgtctccaggacttgaagaagggcaccacgagcatc
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTGGGGATTCCACACGTTTGC 293 671 713 Antisense
ACACGTTTGCCGATCTGTATGCAGG 493 109 728 Antisense
TCTGGAGTGTTTCCACGTGTCACAC 634 607 769 Antisense
CACTTTGCGACTTCTCTGTCAGAAA 434 197 791 Antisense
AACGTGCATCGTTACACAGTCCAAT 104 145 823 Antisense
GTTTATCTGGTTCTGGTTTGTCTTC 574 449 888 Antisense
CACCATCTACCGCTTGAGTTTTGAT 89 201 945 Antisense
TCCCGCCACAACTATATCAGATCTC 356 597 973 Antisense
GCAAGCTTTGCCAACAACGGACTCA 244 321 1045 Antisense
GGCCATTCCACAAAATCAACGTCTC 686 543 1198 Antisense
TGAAGAAGGGCACCACGAGCATCTC 282 575 1230 Antisense
Sequence Source Affymetrix Proprietary Database