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[192258_s_at] zinc-finger DNA-binding protein

Description K02G10.5 /REP_DB=WormBase Gene ID /WP=CE04705 /TR=Q21157 /GB=AAK39251.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc-finger DNA-binding protein
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 54      6grp_highest_nonorm > 81      6grp_total > 71      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 141.1
(-1.4)
P 		328
(3)
P 		307.4
(2.5)
P 		75.4
(-3)
A 		253
B 190.9
(-0.3)
P 		320
(3)
P 		320.1
(3)
P 		83.1
(-3)
P 		237
C 179.5
(-1.9)
P 		326.1
(1.8)
P 		372.7
(3)
P 		138.1
(-3)
P 		235
avr 170.5
(-1.2) 		324.7
(2.8) 		333.4
(3) 		98.9
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 165.1
(-1.8)
P 		295.4
(0.9)
P 		348.3
(1.9)
P 		399.5
(3)
P 		306.2
(1.1)
P 		107.9
(-3)
P 		292
B 188.3
(-2.3)
P 		340.1
(1.1)
P 		302.4
(0.3)
P 		423.9
(3)
P 		225.7
(-1.4)
P 		154.8
(-3)
P 		269
C 173.6
(-2)
P 		311.3
(0.5)
P 		246.6
(-0.6)
P 		448.3
(3)
P 		256
(-0.5)
P 		115.4
(-3)
P 		333
avr 175.7
(-2) 		315.6
(0.8) 		299.1
(0.5) 		423.9
(3) 		262.6
(-0.2) 		126
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 51.4
(0.5)
P 		71.2
(2.2)
P 		80.4
(3)
P 		11
(-3)
A 		69
B 60.9
(1.2)
P 		79
(3)
P 		74.2
(2.5)
P 		17.7
(-3)
P 		61
C 59.4
(-1)
P 		93.8
(1)
P 		129.9
(3)
P 		23.3
(-3)
P 		107
avr 57.2
(0.1) 		81.3
(2) 		94.8
(3) 		17.3
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 30.4
(-2.7)
P 		105.1
(3)
P 		75.9
(0.8)
P 		101.3
(2.7)
P 		92.4
(2)
P 		26.3
(-3)
P 		79
B 65.5
(-2.2)
P 		113.2
(3)
P 		73.4
(-1.3)
P 		112.3
(2.9)
P 		91.7
(0.7)
P 		57.7
(-3)
P 		56
C 64.3
(-0.3)
P 		95
(3)
P 		62.8
(-0.4)
P 		90.2
(2.5)
P 		82.8
(1.7)
P 		38.6
(-3)
P 		56
avr 53.4
(-1.8) 		104.4
(3) 		70.7
(-0.2) 		101.3
(2.7) 		89
(1.5) 		40.9
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192258_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16025
Sequence Type Exemplar sequence
Representative Public ID K02G10.5 NCBI
Target Description K02G10.5 /REP_DB=WormBase Gene ID /WP=CE04705 /TR=Q21157 /GB=AAK39251.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc-finger DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076401 NCBI Caenorhabditis elegans K02G10.5 (K02G10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043402 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4686253:4691161:-1 11/11 None
SNAP00000043394 ENSEMBL cdna:SNAP chromosome:CEL140:X:4688061:4690640:-1 11/11 None
K02G10.5 ENSEMBL cdna:known chromosome:CEL140:X:4687758:4691286:-1 gene:K02G10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4688061-4691287(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger DNA-binding protein
Ensembl K02G10.5
Entrez Gene 180742 Entrez gene
SwissProt Q21157 EMBL-EBI
WormBase CE04705 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39251 Hypothetical protein K02G10.5 [Caenorhabditis elegans] ref|NP_508802.1| K02G10.5 [Caenorhabditis elegans] 0.0
blast CAE68633 Hypothetical protein CBG14523 [Caenorhabditis briggsae] 0.0
blast CAA21751 Hypothetical protein Y70G10A.3 [Caenorhabditis elegans] ref|NP_499267.1| Y70G10A.3 [Caenorhabditis elegans] 7.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508802.1 12 44-66,89-111,118-140,179-201,214-236,262-284,329-351,366-386,399-421,511-533,554-573,599-621
K02G10.5 12 44-66,89-111,118-140,179-201,214-236,262-284,329-351,366-386,399-421,511-533,554-573,599-621
GENEFINDER00000043402 13 21-43,66-88,95-117,156-178,191-213,239-261,306-328,343-363,376-398,488-510,531-550,576-598,639-661
SNAP00000043394 10 17-39,78-100,113-135,161-183,228-250,265-285,298-320,410-432,453-472,498-520
Sequence
Target Sequence 
>C. ELEGANS:192258_S_AT
aactgccattgcgattcatttttcaacccagtctgttcagaagatagcaaattaactttc
ctttcaccttgccatgctggttgtgcagatatgcctggcataaagtttggagcatcaaac
tggacaaattgtggatgctcaaaaaacactattgtgaagaagggatattgcgatgcttca
tgtcagaaacagatctaccaatttatcataatgttcatagctctttccttctgcattttt
atcacagctccggtcctgcaaagttcttcactgcgagttgtgaatcataaacatcgtgat
cacttcacttgcttcggttggctttggatgaggattcttggaagtattccaggagcaata
gtgtttggatacatcattgatgtcaattgcatgtattggcaaaaggactgcgtgtctcaa
aaatgccaattctataatgcttcaaatctaggatgggcattcttctatttcacgattgcc
gtcaagttcaccggagggattctgcttttccttgccgcatactgctaccaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCCATTGCGATTCATTTTTCA 469 141 1354 Antisense
GCAAATTAACTTTCCTTTCACCTTG 613 315 1400 Antisense
ACCTTGCCATGCTGGTTGTGCAGAT 620 85 1419 Antisense
ATAATGTTCATAGCTCTTTCCTTCT 686 25 1561 Antisense
TCTTTCCTTCTGCATTTTTATCACA 608 615 1575 Antisense
GGTCCTGCAAAGTTCTTCACTGCGA 139 503 1605 Antisense
ACATCGTGATCACTTCACTTGCTTC 251 105 1644 Antisense
CACTTGCTTCGGTTGGCTTTGGATG 253 197 1659 Antisense
CGATTGCCGTCAAGTTCACCGGAGG 678 247 1826 Antisense
TCACCGGAGGGATTCTGCTTTTCCT 694 623 1841 Antisense
CCTTGCCGCATACTGCTACCAAGAG 585 269 1863 Antisense
Sequence Source Affymetrix Proprietary Database