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[192257_s_at] NADH-ubiquinone oxidoreductase

Description Y57G11C.12 /REP_DB=WormBase Gene ID /WP=CE14948 /TR=O18236 /GB=CAB16513.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=NADH-ubiquinone oxidoreductase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 40      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 27      6grp_total > 52      4grp_total > 41      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3490
1 2 3 4 range
A 6684.1
(-3)
P 		10173.8
(3)
P 		7939.3
(-0.8)
P 		8652.9
(0.4)
P 		3490
B 6875.7
(-3)
P 		7343.9
(-1.9)
P 		9460.4
(3)
P 		7600.8
(-1.3)
P 		2585
C 6776.1
(-3)
P 		7423.3
(3)
P 		7347.6
(2.3)
P 		6940.1
(-1.5)
P 		647
avr 6778.6
(-3) 		8313.7
(3) 		8249.1
(2.7) 		7731.3
(0.7) 		1535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3813
1 2 3 4 5 6 range
A 7151.5
(0.7)
P 		7822.8
(2.3)
P 		8119.3
(3)
P 		8057.1
(2.9)
P 		5586.8
(-3)
P 		6401.6
(-1.1)
P 		2533
B 6358.7
(-2.1)
P 		6771.6
(-1.2)
P 		8920.8
(3)
P 		7182.8
(-0.4)
P 		6374.9
(-2)
P 		5884.9
(-3)
P 		3036
C 6247.7
(-2.9)
P 		6548.8
(-2.3)
P 		9399.6
(3)
P 		8141.9
(0.6)
P 		6510.7
(-2.4)
P 		6196.6
(-3)
P 		3203
avr 6586
(-2) 		7047.7
(-1) 		8813.2
(3) 		7793.9
(0.7) 		6157.5
(-3) 		6161
(-3) 		2656
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1391
1 2 3 4 range
A 2433.7
(3)
P 		2208.5
(1.8)
P 		2075.5
(1.2)
P 		1266.6
(-3)
P 		1167
B 2192.6
(3)
P 		1813.8
(-1)
P 		2192.2
(3)
P 		1619.7
(-3)
P 		573
C 2243.1
(1.6)
P 		2134.2
(1.2)
P 		2560.9
(3)
P 		1170.2
(-3)
P 		1391
avr 2289.8
(3) 		2052.2
(1.5) 		2276.2
(2.9) 		1352.2
(-3) 		938

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1464
1 2 3 4 5 6 range
A 1318.3
(-3)
P 		2782.2
(3)
P 		1768.2
(-1.2)
P 		2043.5
(-0)
P 		1685.8
(-1.5)
P 		1558.6
(-2)
P 		1464
B 2212.5
(-0.3)
P 		2254
(0.1)
P 		2166.2
(-0.7)
P 		1902.5
(-3)
P 		2590
(3)
P 		2194.5
(-0.5)
P 		688
C 2315.7
(2.4)
P 		1998.2
(-0.1)
P 		2392.4
(3)
P 		1637.3
(-3)
P 		2106.8
(0.7)
P 		2074.4
(0.5)
P 		755
avr 1948.8
(-1.9) 		2344.8
(3) 		2108.9
(0.1) 		1861.1
(-3) 		2127.5
(0.3) 		1942.5
(-2) 		484
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192257_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9374
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.12 NCBI
Target Description Y57G11C.12 /REP_DB=WormBase Gene ID /WP=CE14948 /TR=O18236 /GB=CAB16513.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=NADH-ubiquinone oxidoreductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070389 NCBI Caenorhabditis elegans Y57G11C.12 (Y57G11C.12) mRNA, complete cds. 11/11 None
SNAP00000003479 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14796480:14796923:-1 11/11 None
GENEFINDER00000003565 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14796480:14796923:-1 11/11 None
Y57G11C.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:14796393:14797399:-1 gene:Y57G11C.12 11/11 A 
Y57G11C.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:14796393:14797435:-1 gene:Y57G11C.12 11/11 A 
Y57G11C.12.3 ENSEMBL cdna:known chromosome:CEL140:IV:14796393:14797434:-1 gene:Y57G11C.12 11/11 None
Y57G11C.12.4 ENSEMBL cdna:known chromosome:CEL140:IV:14796393:14797382:-1 gene:Y57G11C.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14796485-14796929(-) 100.0 100.0
Public Domain and Genome References
Gene Title NADH-ubiquinone oxidoreductase
Gene Symbol nuo-3
Ensembl Y57G11C.12
Entrez Gene 178404 Entrez gene
SwissProt O18236 EMBL-EBI
WormBase CE14948 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16651 oxidoreductase activity, acting on NADH or NADPH inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16513 Hypothetical protein Y57G11C.12 [Caenorhabditis elegans] ref|NP_502790.1| Y57G11C.12 [Caenorhabditis elegans] 1.0E-71
blast CAE73906 Hypothetical protein CBG21512 [Caenorhabditis briggsae] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR008011 EMBL-EBI Complex 1 LYR protein 1.8E-24
Sequence
Target Sequence 
>C. ELEGANS:192257_S_AT
gttctggtgggatttcggacttcatgatatgccgctcggcgtgttccgtgctgtcatcaa
gaagcaattcacaaagaacggacatctcaccgatgttcgtgtcgttgacagacttgtcgg
agaaactcatcagcacatgaaatcgatccgttacgcattctacaacccggatcacgtgcg
caactacctgttcgctgaaaatgtcgaagccaagccaaaggactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTGGTGGGATTTCGGACTTCAT 687 441 153 Antisense
CGGACTTCATGATATGCCGCTCGGC 302 243 168 Antisense
TCATGATATGCCGCTCGGCGTGTTC 258 623 174 Antisense
CGTGTTCCGTGCTGTCATCAAGAAG 213 245 192 Antisense
GAACGGACATCTCACCGATGTTCGT 686 347 228 Antisense
ATCTCACCGATGTTCGTGTCGTTGA 59 33 236 Antisense
GTTCGTGTCGTTGACAGACTTGTCG 613 441 247 Antisense
AGCACATGAAATCGATCCGTTACGC 20 77 284 Antisense
TCCGTTACGCATTCTACAACCCGGA 288 595 299 Antisense
TGCGCAACTACCTGTTCGCTGAAAA 473 583 329 Antisense
ATGTCGAAGCCAAGCCAAAGGACTT 33 47 353 Antisense
Sequence Source Affymetrix Proprietary Database