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[192256_at] lysosomal Pro-X carboxypeptidase

Description C26B9.5 /REP_DB=WormBase Gene ID /WP=CE04098 /TR=Q18198 /GB=AAA82453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=lysosomal Pro-X carboxypeptidase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 33      6grp_total > 53      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1897
1 2 3 4 range
A 2588.9
(2.6)
P 		2688.4
(3)
P 		2508.1
(2.2)
P 		1351.6
(-3)
P 		1337
B 2640.7
(3)
P 		2572.5
(2.7)
P 		2524.7
(2.6)
P 		1048.6
(-3)
P 		1592
C 2945.2
(3)
P 		2383.4
(1)
P 		2495
(1.4)
P 		1259.7
(-3)
P 		1686
avr 2724.9
(3) 		2548.1
(2.3) 		2509.3
(2.1) 		1220
(-3) 		1505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 808
1 2 3 4 5 6 range
A 1548.5
(-1.5)
P 		1724.9
(-0.2)
P 		2152.8
(3)
P 		1617.8
(-1)
P 		1391.1
(-2.7)
P 		1344.4
(-3)
P 		808
B 1496.2
(-2.7)
P 		1754
(-0)
P 		2041.9
(3)
P 		1556.1
(-2.1)
P 		1469.8
(-3)
P 		1509.2
(-2.6)
P 		572
C 1606.8
(0.1)
P 		1642.6
(0.9)
P 		1734
(3)
P 		1655.2
(1.2)
P 		1470.4
(-3)
P 		1609.3
(0.2)
P 		264
avr 1550.5
(-1.8) 		1707.2
(-0) 		1976.2
(3) 		1609.7
(-1.1) 		1443.8
(-3) 		1487.6
(-2.5) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 777
1 2 3 4 range
A 942.6
(3)
P 		583.6
(0.1)
P 		655.7
(0.7)
P 		197.8
(-3)
P 		745
B 842.1
(3)
P 		635.3
(1)
P 		585
(0.5)
P 		223.4
(-3)
P 		619
C 975
(3)
P 		685.2
(0.7)
P 		869.6
(2.2)
P 		212.4
(-3)
P 		763
avr 919.9
(3) 		634.7
(0.6) 		703.4
(1.2) 		211.2
(-3) 		709

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 285.4
(-3)
P 		613.5
(3)
P 		468.8
(0.4)
P 		410.3
(-0.7)
P 		419.8
(-0.5)
P 		327.3
(-2.2)
P 		328
B 520.6
(0.5)
P 		583.8
(2.6)
P 		495.8
(-0.3)
P 		412.2
(-3)
P 		597.2
(3)
P 		562.8
(1.9)
P 		185
C 595.6
(3)
P 		501.2
(0.8)
P 		441.3
(-0.5)
P 		332.9
(-3)
P 		475.8
(0.3)
P 		538.7
(1.7)
P 		263
avr 467.2
(-0.3) 		566.2
(3) 		468.6
(-0.2) 		385.1
(-3) 		497.6
(0.7) 		476.3
(0) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16562
Sequence Type Exemplar sequence
Representative Public ID C26B9.5 NCBI
Target Description C26B9.5 /REP_DB=WormBase Gene ID /WP=CE04098 /TR=Q18198 /GB=AAA82453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=lysosomal Pro-X carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076502 NCBI Caenorhabditis elegans C26B9.5 (C26B9.5) mRNA, complete cds. 11/11 None
SNAP00000015895 ENSEMBL cdna:SNAP chromosome:CEL140:X:5329504:5332234:1 11/11 None
GENEFINDER00000015905 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5329504:5332234:1 11/11 None
C26B9.5 ENSEMBL cdna:known chromosome:CEL140:X:5329420:5332302:1 gene:C26B9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5329504-5332235(+) 100.0 100.0
Public Domain and Genome References
Gene Title lysosomal Pro-X carboxypeptidase
Ensembl C26B9.5
Entrez Gene 180803 Entrez gene
SwissProt Q18198 EMBL-EBI
WormBase CE04098 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82453 Hypothetical protein C26B9.5 [Caenorhabditis elegans] ref|NP_508903.1| C26B9.5 [Caenorhabditis elegans] 0.0
blast CAE68731 Hypothetical protein CBG14660 [Caenorhabditis briggsae] 0.0
blast AAB36854 Hypothetical protein F56F10.1 [Caenorhabditis elegans] ref|NP_508170.2| F56F10.1 [Caenorhabditis elegans] sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 precursor 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192256_AT
tgaacggggacccagttggaccattccaaaattcgtacagtgatatgatgaccgtcctag
ctaatgcttcctatgatgataatagtgcggttccaggagatattgctgctaatcgtggct
ggatgtggctgtgctgtaacgaactcggagctcttcaaactaccgatcaaggaagaaata
ttttccaacaaaccgtaccattgggatactttatcgacatgtgcactgacatgtttggag
ccgatattggtatcaagtatgttcgcgacaataacaaacagactttgtacaaatacaagg
gtgctgacaactatcaagctaccaatgtcgtattacccaatggagcattcgacccatggc
atgttctaggaacatacaacaatgacaccgccaatcacatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGGGGACCCAGTTGGACCATT 7 573 1031 Antisense
ACAGTGATATGATGACCGTCCTAGC 624 107 1067 Antisense
CCGTCCTAGCTAATGCTTCCTATGA 508 265 1082 Antisense
GATATTGCTGCTAATCGTGGCTGGA 617 425 1129 Antisense
TGGCTGTGCTGTAACGAACTCGGAG 76 545 1156 Antisense
GAACTCGGAGCTCTTCAAACTACCG 688 347 1171 Antisense
GGATACTTTATCGACATGTGCACTG 80 511 1234 Antisense
TGTGCACTGACATGTTTGGAGCCGA 94 557 1250 Antisense
AAGCTACCAATGTCGTATTACCCAA 157 149 1346 Antisense
GCATTCGACCCATGGCATGTTCTAG 554 307 1375 Antisense
AACAATGACACCGCCAATCACATGA 313 135 1408 Antisense
Sequence Source Affymetrix Proprietary Database