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[192255_at] Multidrug resistance protein like

Description F14D7.6 /REP_DB=WormBase Gene ID /WP=CE09384 /TR=Q19453 /GB=CAB01157.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Multidrug resistance protein like
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 01      4grp_total > 55      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 513.7
(3)
P 		198.1
(-3)
P 		235.4
(-2.3)
P 		231.9
(-2.4)
P 		316
B 519.9
(3)
P 		202.4
(-2.8)
P 		265.2
(-1.6)
P 		190.7
(-3)
P 		329
C 409.8
(3)
P 		191.4
(-3)
P 		259.9
(-1.1)
P 		247.4
(-1.5)
P 		218
avr 481.1
(3) 		197.3
(-3) 		253.5
(-1.8) 		223.3
(-2.5) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 167.8
(0.3)
P 		140.6
(-2.1)
P 		198.5
(3)
P 		130.9
(-3)
P 		172
(0.6)
P 		135.3
(-2.6)
P 		68
B 165.5
(-0.1)
P 		208.6
(3)
P 		126.2
(-3)
P 		145.1
(-1.6)
P 		165.4
(-0.1)
P 		133.7
(-2.5)
P 		82
C 145.4
(-0.7)
P 		210.2
(3)
P 		132.3
(-1.5)
P 		186.4
(1.6)
P 		105.3
(-3)
P 		171.8
(0.8)
P 		105
avr 159.6
(-1.1) 		186.5
(3) 		152.3
(-2.2) 		154.1
(-1.9) 		147.6
(-2.9) 		146.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 187
(3)
P 		43
(-2.6)
P 		61.5
(-1.9)
P 		33.9
(-3)
P 		153
B 165.8
(3)
P 		50
(-2.5)
P 		61.4
(-2)
P 		40.6
(-3)
P 		125
C 135.7
(3)
P 		55
(-2.2)
P 		90.6
(0.1)
P 		41.7
(-3)
P 		94
avr 162.8
(3) 		49.3
(-2.5) 		71.2
(-1.4) 		38.7
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 30.9
(-3)
P 		50
(2.5)
P 		43.2
(0.5)
P 		33.2
(-2.3)
P 		51.9
(3)
P 		33
(-2.4)
P 		21
B 57.6
(1.2)
P 		69.4
(3)
P 		30.6
(-3)
P 		38.4
(-1.8)
P 		67.2
(2.7)
P 		49.8
(-0)
P 		39
C 53.9
(1)
P 		64.1
(3)
P 		33.7
(-3)
P 		37.5
(-2.3)
P 		34.1
(-2.9)
P 		57.5
(1.7)
P 		30
avr 47.5
(-0.2) 		61.2
(3) 		35.8
(-3) 		36.4
(-2.9) 		51.1
(0.6) 		46.8
(-0.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12631
Sequence Type Exemplar sequence
Representative Public ID F14D7.6 NCBI
Target Description F14D7.6 /REP_DB=WormBase Gene ID /WP=CE09384 /TR=Q19453 /GB=CAB01157.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Multidrug resistance protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074143 NCBI Caenorhabditis elegans F14D7.6 (F14D7.6) mRNA, complete cds. 11/11 None
SNAP00000017358 ENSEMBL cdna:SNAP chromosome:CEL140:V:14307930:14308974:1 11/11 None
GENEFINDER00000017370 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14302854:14308974:1 11/11 None
F14D7.6 ENSEMBL cdna:known chromosome:CEL140:V:14304009:14309015:1 gene:F14D7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14303727-14308974(+) 90.86 100.0
Public Domain and Genome References
Gene Title Multidrug resistance protein like
Ensembl F14D7.6
Entrez Gene 184466 Entrez gene
SwissProt Q19453 EMBL-EBI
WormBase CE30658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01157 Hypothetical protein F14D7.6 [Caenorhabditis elegans] ref|NP_506544.2| F14D7.6 [Caenorhabditis elegans] 0.0
blast CAE60947 Hypothetical protein CBG04675 [Caenorhabditis briggsae] 0.0
blast AAB66157 Hypothetical protein T28C12.2 [Caenorhabditis elegans] ref|NP_504616.1| T28C12.2 [Caenorhabditis elegans] 1.0E-153
blast CAE71865 Hypothetical protein CBG18913 [Caenorhabditis briggsae] 1.0E-150
blast CAE60947 Hypothetical protein CBG04675 [Caenorhabditis briggsae] 1.0E-125
blast AAB66157 Hypothetical protein T28C12.2 [Caenorhabditis elegans] ref|NP_504616.1| T28C12.2 [Caenorhabditis elegans] 1.0E-124
blast AAB66157 Hypothetical protein T28C12.2 [Caenorhabditis elegans] ref|NP_504616.1| T28C12.2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 6.09999990463257
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506544.2 8 40-62,77-99,108-130,135-157,170-192,210-232,258-280,295-317
F14D7.6 8 40-62,77-99,108-130,135-157,170-192,210-232,258-280,295-317
SNAP00000017358 7 5-24,48-68,88-110,123-142,173-195,216-238,243-265
GENEFINDER00000017370 10 108-130,145-167,179-201,205-227,295-317,341-363,370-389,419-441,462-484,489-511
Sequence
Target Sequence 
>C. ELEGANS:192255_AT
gctcattggacttggtttcttcctcctttaccaagtgttcatgtatccttggggattcta
ttcaggaccattggattatcttcctgatggtaaagatactgatgtggcaggaggttgtta
tcagagttataagtggtgccaatggacgacgagagttccattgccagtttatttgatttg
ttttattgttttctttggaatagcttttccgtttgtggaatcaccttccgctgctctcta
ttcagagattttgggcccaagaaagcaaggaaatatgcagggattgttttctttaggtgg
aagtttagctcccgttattggatctttgagttcaacagccttgttccaagctagcggttt
ccgatacgtaatggtgtaccaggctgtggttctagtcattggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCATTGGACTTGGTTTCTTCCTC 327 301 1029 Antisense
CTTCCTCCTTTACCAAGTGTTCATG 128 219 1047 Antisense
GGGGATTCTATTCAGGACCATTGGA 44 499 1079 Antisense
GGACCATTGGATTATCTTCCTGATG 120 523 1093 Antisense
GGACGACGAGAGTTCCATTGCCAGT 538 523 1172 Antisense
TTCCGTTTGTGGAATCACCTTCCGC 171 697 1235 Antisense
TTCCGCTGCTCTCTATTCAGAGATT 186 699 1254 Antisense
GTTTAGCTCCCGTTATTGGATCTTT 381 447 1331 Antisense
GAGTTCAACAGCCTTGTTCCAAGCT 58 399 1356 Antisense
TGTTCCAAGCTAGCGGTTTCCGATA 266 561 1370 Antisense
CAGGCTGTGGTTCTAGTCATTGGAG 564 207 1408 Antisense
Sequence Source Affymetrix Proprietary Database