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[192252_at] serine/threonine-protein kinase

Description F18F11.4 /REP_DB=WormBase Gene ID /WP=CE17687 /TR=P91263 /GB=AAB42287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_total > 11      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 2.6
(-3)
A 		136.5
(0.8)
P 		214.7
(3)
P 		14.3
(-2.7)
A 		212
B 10.4
(-3)
A 		161.4
(3)
P 		128.1
(1.7)
P 		17.5
(-2.7)
A 		151
C 2.7
(-3)
A 		205.7
(2.5)
P 		223.6
(3)
P 		13
(-2.7)
A 		221
avr 5.2
(-3) 		167.9
(2.3) 		188.8
(3) 		14.9
(-2.7) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 19.7
(1.2)
A 		27.6
(3)
A 		17.2
(0.6)
A 		3.8
(-2.5)
A 		1.6
(-3)
A 		1.9
(-2.9)
A 		26
B 0.8
(-3)
A 		33.6
(3)
P 		5.6
(-2.1)
A 		28.2
(2)
A 		11.1
(-1.1)
A 		0.7
(-3)
A 		33
C 3.9
(-2.7)
A 		48.6
(3)
P 		22.8
(-0.3)
A 		12.3
(-1.6)
A 		1.6
(-3)
A 		2.8
(-2.8)
A 		47
avr 8.1
(-1.9) 		36.6
(3) 		15.2
(-0.7) 		14.8
(-0.8) 		4.8
(-2.5) 		1.8
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 0.9
(-3)
A 		29.6
(0.1)
P 		56.1
(3)
P 		2.1
(-2.9)
A 		55
B 3.3
(-3)
A 		39.9
(3)
P 		29.7
(1.3)
P 		3.7
(-2.9)
A 		37
C 0.9
(-3)
A 		59.1
(1.5)
P 		77.9
(3)
P 		2.2
(-2.9)
A 		77
avr 1.7
(-3) 		42.9
(1.7) 		54.6
(3) 		2.7
(-2.9) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.6
(-1)
A 		9.8
(3)
A 		3.7
(-0.9)
A 		1
(-2.7)
A 		0.5
(-3)
A 		0.5
(-3)
A 		9
B 0.3
(-3)
A 		11.2
(3)
P 		1.4
(-2.4)
A 		7.5
(1)
A 		4.5
(-0.7)
A 		0.3
(-3)
A 		11
C 1.4
(-2.6)
A 		14.8
(3)
P 		5.8
(-0.8)
A 		2.5
(-2.2)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		14
avr 1.8
(-2.4) 		11.9
(3) 		3.6
(-1.4) 		3.7
(-1.4) 		1.8
(-2.4) 		0.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11089
Sequence Type Exemplar sequence
Representative Public ID F18F11.4 NCBI
Target Description F18F11.4 /REP_DB=WormBase Gene ID /WP=CE17687 /TR=P91263 /GB=AAB42287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067505 NCBI Caenorhabditis elegans F18F11.4 (F18F11.4) mRNA, complete cds. 11/11 None
SNAP00000041660 ENSEMBL cdna:SNAP chromosome:CEL140:IV:330957:334312:1 11/11 None
GENEFINDER00000041665 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:328075:334240:1 10/11 None
F18F11.4 ENSEMBL cdna:known chromosome:CEL140:IV:330860:334385:1 gene:F18F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:328074-334312(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine-protein kinase
Ensembl F18F11.4
Entrez Gene 184653 Entrez gene
SwissProt P91263 EMBL-EBI
WormBase CE37504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_499906 F18F11.4 [Caenorhabditis elegans] gb|AAO91740.2| Hypothetical protein F18F11.4 [Caenorhabditis elegans] 0.0
blast CAB03535 Hypothetical protein T09E11.8 [Caenorhabditis elegans] ref|NP_493126.1| T09E11.8 [Caenorhabditis elegans] 0.0
blast NP_001023134 F18F11.5 [Caenorhabditis elegans] gb|AAO91741.1| Hypothetical protein F18F11.5 [Caenorhabditis elegans] 0.0
blast CAB03535 Hypothetical protein T09E11.8 [Caenorhabditis elegans] ref|NP_493126.1| T09E11.8 [Caenorhabditis elegans] 1.0E-177
blast CAE65575 Hypothetical protein CBG10571 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.1E-27
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.0E-36
Pfam IPR000719 EMBL-EBI Protein kinase 7.8E-15
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.0E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499906.2 1 9-31
F18F11.4 1 9-31
GENEFINDER00000041665 2 311-345,358-380
Sequence
Target Sequence 
>C. ELEGANS:192252_AT
gggattcgattcatactccacgtgatgtaaattttggcttacagtctgtgagggtgcttg
agattgatagcattcgttacgattatagagtgtcaaagaaaatgtttcatcggcctgaga
gagttgttcactttgatatgcactcagtatatcgcaatgaattatccgaagacaaaacac
atcaacatacaacaattgagatatacgatagcttgaatctttattatcttcatcttcgaa
gatttgaacgtcatttactgaacccacctgttgttaaatataacaaccgatttaatagct
cattactaatgaaattaaacacaaaaatgttggatcaattcacggaacggatggagggaa
ctgagtttggagaagcaatgctgtctccttgggctttagacgctcatcaaacaatgcgag
atttagaacaatgtcgacgagaggcttttggcacaatattagacgatagaaaccaaatgt
gtcagcaaagttctgctggatgtgaaggaatgctgacatctggcatatcgtttatcaaaa
cacctcaaacatgggtaaatattgctcacaaggcacttttcaatagctacgtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTCGATTCATACTCCACGTGA 379 491 2267 Antisense
CTTACAGTCTGTGAGGGTGCTTGAG 430 221 2304 Antisense
GAGATTGATAGCATTCGTTACGATT 196 397 2326 Antisense
CATCGGCCTGAGAGAGTTGTTCACT 10 213 2374 Antisense
GTTGTTCACTTTGATATGCACTCAG 644 437 2389 Antisense
TGAACGTCATTTACTGAACCCACCT 558 573 2511 Antisense
GAGAAGCAATGCTGTCTCCTTGGGC 305 391 2636 Antisense
TCCTTGGGCTTTAGACGCTCATCAA 264 589 2652 Antisense
AATGTCGACGAGAGGCTTTTGGCAC 247 163 2696 Antisense
GCTGACATCTGGCATATCGTTTATC 27 297 2778 Antisense
GGCACTTTTCAATAGCTACGTCGAG 102 535 2838 Antisense
Sequence Source Affymetrix Proprietary Database