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[192251_at] carnitine palmitoyltransferase II

Description R07H5.2 /REP_DB=WormBase Gene ID /WP=CE18907 /TR=Q17831 /GB=CAB03233.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=carnitine palmitoyltransferase II
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 58      6grp_total > 57      4grp_total > 0      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1310
1 2 3 4 range
A 2028.1
(-2)
P 		1831.3
(-3)
P 		2628.2
(0.9)
P 		3054.7
(3)
P 		1223
B 2155.1
(-1.3)
P 		1800.3
(-3)
P 		2548.6
(0.5)
P 		3078.7
(3)
P 		1278
C 1909.2
(-2.2)
P 		1768.3
(-3)
P 		2415.9
(0.6)
P 		2834.7
(3)
P 		1066
avr 2030.8
(-1.8) 		1800
(-3) 		2530.9
(0.7) 		2989.4
(3) 		1189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2541
1 2 3 4 5 6 range
A 2942.6
(-0.3)
P 		2079.7
(-2.5)
P 		2000.5
(-2.7)
P 		2603.9
(-1.2)
P 		1898.7
(-3)
P 		4200.1
(3)
P 		2301
B 2417.4
(0.7)
P 		1659.2
(-3)
P 		2135.9
(-0.7)
P 		2422.5
(0.8)
P 		1726.5
(-2.7)
P 		2878.2
(3)
P 		1219
C 2714.3
(1.2)
P 		1742.7
(-3)
P 		2742
(1.3)
P 		2067.3
(-1.6)
P 		1804
(-2.7)
P 		3140.6
(3)
P 		1398
avr 2691.4
(0.3) 		1827.2
(-2.9) 		2292.8
(-1.2) 		2364.6
(-0.9) 		1809.7
(-3) 		3406.3
(3) 		1597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 738.4
(3)
P 		397.5
(-3)
P 		687.1
(2.1)
P 		447.1
(-2.1)
P 		341
B 687.2
(3)
P 		444.6
(-3)
P 		590.6
(0.6)
P 		656.1
(2.2)
P 		243
C 632
(-0.5)
P 		508.4
(-2.5)
P 		842
(3)
P 		478
(-3)
P 		364
avr 685.9
(2.5) 		450.2
(-3) 		706.6
(3) 		527.1
(-1.2) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 658
1 2 3 4 5 6 range
A 542.4
(-1.9)
P 		739.6
(0.1)
P 		435.7
(-3)
P 		660.4
(-0.7)
P 		572.9
(-1.6)
P 		1022.6
(3)
P 		587
B 841.1
(0.5)
P 		552.3
(-2.6)
P 		518.7
(-3)
P 		641.6
(-1.7)
P 		701.4
(-1)
P 		1073.3
(3)
P 		555
C 1006.1
(2.6)
P 		531.8
(-1.9)
P 		697.9
(-0.3)
P 		415.7
(-3)
P 		583.7
(-1.4)
P 		1051.3
(3)
P 		636
avr 796.5
(-0) 		607.9
(-2.3) 		550.8
(-3) 		572.6
(-2.7) 		619.3
(-2.2) 		1049.1
(3) 		498
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8459
Sequence Type Exemplar sequence
Representative Public ID R07H5.2 NCBI
Target Description R07H5.2 /REP_DB=WormBase Gene ID /WP=CE18907 /TR=Q17831 /GB=CAB03233.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=carnitine palmitoyltransferase II
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069695 NCBI Caenorhabditis elegans R07H5.2 (R07H5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030278 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11181321:11182788:1 11/11 None
R07H5.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:11179615:11182964:1 gene:R07H5.2 11/11 None
R07H5.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11179617:11182972:1 gene:R07H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030257 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11179622-11182794(+) 100.0 100.0
Public Domain and Genome References
Gene Title carnitine palmitoyltransferase II
Gene Symbol cpt-2
Ensembl R07H5.2
Entrez Gene 178025 Entrez gene
SwissProt Q17831 EMBL-EBI
WormBase CE18907 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586984_S_AT similar to Carnitine O-palmitoyltransferase II, mitochondrial precursor (CPT II) cfa
CANINE_2:CFA.15225.1.S1_A_AT similar to Carnitine O-palmitoyltransferase II, mitochondrial precursor (CPT II) cfa
CANINE_2:CFA.20950.1.S1_S_AT similar to Carnitine O-palmitoyltransferase II, mitochondrial precursor (CPT II) cfa
CANINE_2:CFAAFFX.29260.1.S1_S_AT similar to Carnitine O-palmitoyltransferase II, mitochondrial precursor (CPT II) cfa
DROSOPHILA_2:1627839_AT dm
DROSGENOME1:141480_AT dm
CHICKEN:GGA.16218.1.S1_S_AT carnitine palmitoyltransferase II gga
HG-U133A:204264_AT carnitine palmitoyltransferase II hs
HG-U133_PLUS_2:204264_AT carnitine palmitoyltransferase II hs
HG-FOCUS:204264_AT carnitine palmitoyltransferase II hs
HG-U133A_2:204264_AT carnitine palmitoyltransferase II hs
HG-U133_PLUS_2:204263_S_AT carnitine palmitoyltransferase II hs
HG-U133A:204263_S_AT carnitine palmitoyltransferase II hs
HG-U133A_2:204263_S_AT carnitine palmitoyltransferase II hs
HUGENEFL:U09646_AT carnitine palmitoyltransferase II hs
U133_X3P:G180988_3P_A_AT carnitine palmitoyltransferase II hs
HG-U95E:80602_AT carnitine palmitoyltransferase II hs
HG-U95E:74089_AT Carnitine palmitoyltransferase II hs
MOUSE430A_2:1447820_X_AT carnitine palmitoyltransferase 2 mm
MOE430A:1447820_X_AT carnitine palmitoyltransferase 2 mm
MOUSE430_2:1447820_X_AT carnitine palmitoyltransferase 2 mm
MU11KSUBA:U01163_S_AT carnitine palmitoyltransferase 2 mm
MG-U74AV2:95646_AT carnitine palmitoyltransferase 2 mm
MG-U74AV2:161978_R_AT carnitine palmitoyltransferase 2 mm
MOE430A:1416772_AT carnitine palmitoyltransferase 2 mm
MOUSE430A_2:1416772_AT carnitine palmitoyltransferase 2 mm
MOUSE430_2:1416772_AT carnitine palmitoyltransferase 2 mm
MU19KSUBC:TC36722_S_AT Carnitine palmitoyltransferase 2 (Cpt2), mRNA mm
RG-U34A:J05470_AT carnitine palmitoyltransferase 2 rn
RG-U34B:RC_AI058968_F_AT carnitine palmitoyltransferase 2 rn
RAE230A:1386927_AT carnitine palmitoyltransferase 2 rn
RAT230_2:1386927_AT carnitine palmitoyltransferase 2 rn
RG-U34C:RC_AI070389_AT Carnitine palmitoyltransferase 2 rn
YEAST_2:1778223_AT Outer mitochondrial carnitine acetyltransferase, minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97431 Hypothetical protein R07H5.2 [Caenorhabditis elegans] emb|CAB03233.1| Hypothetical protein R07H5.2 [Caenorhabditis elegans] ref|NP_502096.1| R07H5.2 [Caenorhabditis elegans] 0.0
blast CAE62018 Hypothetical protein CBG06027 [Caenorhabditis briggsae] 0.0
blast EAL38971 ENSANGP00000027771 [Anopheles gambiae str. PEST] ref|XP_552786.1| ENSANGP00000027771 [Anopheles gambiae str. PEST] 1.0E-156
blast CAA97431 Hypothetical protein R07H5.2 [Caenorhabditis elegans] emb|CAB03233.1| Hypothetical protein R07H5.2 [Caenorhabditis elegans] ref|NP_502096.1| R07H5.2 [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 5.8E-119
Sequence
Target Sequence 
>C. ELEGANS:192251_AT
caccggattctgtgatgcagcttgctattcaaatggcattctattctttgtacaaagagt
ttgttccaacgtatgagtcatgttccactgctgctttcttgaagggaagaactgaatgca
tgagatcggcaacatcagctacgcgtgccgccaccttggctattcttgaagaaaatcgta
aagatgttcgacaactattgactgattgctccacacaacatttccaacttgtaaaagaag
catcaatgggacaaggatatgatcgacatttgctcggcctcaaaatcacagctcaacgat
tgagccaaccaactccagatttcttccaagatccaggatacacgagaatgggtcattttg
tactttcaacgagcactttgtcaacggatacgattgtcttcggaggattcggaccagttg
tgcaagatggattcggtattggatacaacgttgttcccaacaaactcggagccgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGGATTCTGTGATGCAGCTTGC 559 201 1379 Antisense
ACGTATGAGTCATGTTCCACTGCTG 230 95 1447 Antisense
TTCCACTGCTGCTTTCTTGAAGGGA 632 697 1461 Antisense
ATCGGCAACATCAGCTACGCGTGCC 411 33 1503 Antisense
AACTATTGACTGATTGCTCCACACA 604 139 1571 Antisense
GCTCCACACAACATTTCCAACTTGT 435 297 1586 Antisense
TATGATCGACATTTGCTCGGCCTCA 340 657 1636 Antisense
GAGCCAACCAACTCCAGATTTCTTC 49 385 1680 Antisense
GTACTTTCAACGAGCACTTTGTCAA 385 345 1738 Antisense
GGAGGATTCGGACCAGTTGTGCAAG 477 515 1780 Antisense
TTCCCAACAAACTCGGAGCCGTTAT 425 669 1832 Antisense
Sequence Source Affymetrix Proprietary Database