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[192248_at] adenosine receptor like protein

Description F49E11.2 /REP_DB=WormBase Gene ID /WP=CE05898 /TR=Q20601 /GB=CAA94343.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=adenosine receptor like protein
Cluster 6grp_total > 91      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 670
1 2 3 4 range
A 10.2
(-3)
A 		590.3
(2.7)
P 		621.4
(3)
P 		90.8
(-2.2)
A 		611
B 25.4
(-3)
A 		619.2
(3)
P 		465
(1.4)
P 		61.2
(-2.6)
A 		594
C 12.8
(-3)
A 		680
(3)
P 		553
(1.9)
P 		45.9
(-2.7)
A 		667
avr 16.1
(-3) 		629.8
(3) 		546.5
(2.2) 		66
(-2.5) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 304.1
(0.4)
P 		427
(2.1)
P 		181.4
(-1.3)
P 		492.8
(3)
P 		419.7
(2)
P 		54.7
(-3)
A 		438
B 283.5
(-0.2)
P 		400.4
(1.3)
P 		193.7
(-1.4)
P 		533.9
(3)
P 		414.8
(1.5)
P 		65.6
(-3)
A 		468
C 255.5
(-0.2)
P 		458.4
(3)
P 		253.6
(-0.2)
P 		441.5
(2.7)
P 		271.8
(0.1)
P 		76.2
(-3)
A 		382
avr 281
(0.1) 		428.6
(2.1) 		209.6
(-1) 		489.4
(3) 		368.8
(1.3) 		65.5
(-3) 		424
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 3.7
(-3)
A 		128.1
(1.7)
P 		162.4
(3)
P 		13.3
(-2.6)
A 		159
B 8.1
(-3)
A 		152.9
(3)
P 		107.7
(1.1)
P 		13
(-2.8)
A 		145
C 4.3
(-3)
A 		195.5
(3)
P 		192.7
(2.9)
P 		7.7
(-2.9)
A 		191
avr 5.4
(-3) 		158.8
(3) 		154.3
(2.8) 		11.3
(-2.8) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 56.1
(-1.1)
P 		151.9
(3)
P 		39.5
(-1.9)
P 		125
(1.8)
P 		126.6
(1.9)
P 		13.3
(-3)
A 		139
B 98.7
(0.1)
P 		133.3
(1.5)
P 		47
(-2.1)
P 		141.4
(1.9)
P 		168.5
(3)
P 		24.5
(-3)
A 		144
C 94.7
(0.6)
P 		139.9
(3)
P 		64.6
(-0.9)
P 		88.8
(0.3)
P 		87.9
(0.3)
P 		25.5
(-3)
A 		114
avr 83.2
(0.1) 		141.7
(3) 		50.4
(-1.5) 		118.4
(1.8) 		127.7
(2.3) 		21.1
(-3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8709
Sequence Type Exemplar sequence
Representative Public ID F49E11.2 NCBI
Target Description F49E11.2 /REP_DB=WormBase Gene ID /WP=CE05898 /TR=Q20601 /GB=CAA94343.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=adenosine receptor like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070094(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070094 NCBI Caenorhabditis elegans F49E11.2 (F49E11.2) mRNA, complete cds. 10/11 None
GENEFINDER00000011588 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13036047:13038896:-1 11/11 None
F49E11.2 ENSEMBL cdna:known chromosome:CEL140:IV:13037173:13038896:-1 gene:F49E11.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011565 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13037178-13038902(-) 96.31 100.0
Public Domain and Genome References
Gene Title adenosine receptor like protein
Ensembl F49E11.2
Entrez Gene 186046 Entrez gene
SwissProt Q20601 EMBL-EBI
WormBase CE35551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56331 Hypothetical protein CBG23996 [Caenorhabditis briggsae] 0.0
blast CAA94343 Hypothetical protein F49E11.2 [Caenorhabditis elegans] ref|NP_502495.2| F49E11.2 [Caenorhabditis elegans] 1.0E-116
blast CAA94343 Hypothetical protein F49E11.2 [Caenorhabditis elegans] ref|NP_502495.2| F49E11.2 [Caenorhabditis elegans] 1.0E-113
blast CAE56331 Hypothetical protein CBG23996 [Caenorhabditis briggsae] 1.0E-105
blast CAE70076 Hypothetical protein CBG16517 [Caenorhabditis briggsae] 3.0E-10
blast CAE70076 Hypothetical protein CBG16517 [Caenorhabditis briggsae] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502495.2 5 44-66,78-100,110-132,153-175,198-220
F49E11.2 5 44-66,78-100,110-132,153-175,198-220
GENEFINDER00000011588 7 44-66,78-100,110-132,153-175,209-231,261-283,314-336
Sequence
Target Sequence 
>C. ELEGANS:192248_AT
gactcccatattttcgattgtttctttcgcattttcaataactcttcttgctgcaattat
atatgctctgcttggaaggaagatcccgtcaagaaaatattgcattataatttcccgaac
tctggctgatattttctcgtcagtgctcatcgctgccgcatctcttttcgccaattcata
ctctgcttcctacatggttcttgccctcttcctctacatttgcacattcggagtcattca
attgacgtcttctcatatcgctgtaattattttaagacagataagtgtgactcgtcccta
tgggttccagtcgatttgcagtattcgtcgtttatcacttatcgttggtttcacctggat
tttatcgattatgtactcggctgcgtatactccaatgaccacagttattgtggatgcgtc
gaaggaagatagaggtattattgcacgtggcgccaggctatcccattacgtttgtccctt
ccatagttgccaacggcctcttatcatcactgcaatcattattgtcgtcgtttcaatgtt
cacagttctcggctcctacgccatcgttatcgcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCCATATTTTCGATTGTTTCT 585 373 138 Antisense
AATTTCCCGAACTCTGGCTGATATT 578 173 246 Antisense
CTCTTTTCGCCAATTCATACTCTGC 433 229 299 Antisense
TTGACGTCTTCTCATATCGCTGTAA 495 699 379 Antisense
GATAAGTGTGACTCGTCCCTATGGG 139 423 417 Antisense
TATCACTTATCGTTGGTTTCACCTG 638 657 470 Antisense
TTATGTACTCGGCTGCGTATACTCC 418 679 506 Antisense
TATTATTGCACGTGGCGCCAGGCTA 530 661 573 Antisense
ATAGTTGCCAACGGCCTCTTATCAT 62 23 620 Antisense
GTCGTCGTTTCAATGTTCACAGTTC 623 471 661 Antisense
CTCCTACGCCATCGTTATCGCGAAA 685 233 690 Antisense
Sequence Source Affymetrix Proprietary Database