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[192246_s_at]

Description C06C3.1 /REP_DB=WormBase Gene ID /WP=CE20486 /GEN=mel-11 /TR=Q17718 /GB=CAA87782.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ankyrin-like repeats
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 29      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 85      6grp_total > 38      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 917.3
(3)
P 		651.1
(-1.2)
P 		545.1
(-2.8)
P 		534
(-3)
P 		383
B 721.1
(2.2)
P 		544
(-1.3)
P 		455.9
(-3)
P 		762.4
(3)
P 		307
C 914.3
(3)
P 		685.2
(-0.3)
P 		577.9
(-1.8)
P 		492.4
(-3)
P 		422
avr 850.9
(3) 		626.8
(-1.1) 		526.3
(-3) 		596.3
(-1.7) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 876.2
(1.3)
P 		1036.9
(3)
P 		466.6
(-3)
P 		639
(-1.2)
P 		833
(0.9)
P 		984.2
(2.4)
P 		570
B 969.1
(3)
P 		912.3
(2.4)
P 		418.5
(-3)
P 		687.6
(-0.1)
P 		773.6
(0.9)
P 		820.4
(1.4)
P 		551
C 1080.8
(3)
P 		819.2
(-0.7)
P 		839
(-0.4)
P 		653.7
(-3)
P 		894.1
(0.4)
P 		791
(-1.1)
P 		427
avr 975.4
(3) 		922.8
(2.2) 		574.7
(-3) 		660.1
(-1.7) 		833.6
(0.9) 		865.2
(1.3) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 334
(3)
P 		141.3
(-1.5)
P 		142.5
(-1.5)
P 		78.2
(-3)
P 		256
B 230
(3)
P 		134.4
(-1.6)
P 		105.6
(-3)
P 		162.5
(-0.3)
P 		124
C 302.7
(3)
P 		197
(0.1)
P 		201.4
(0.2)
P 		83
(-3)
P 		220
avr 288.9
(3) 		157.6
(-1.4) 		149.8
(-1.6) 		107.9
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 161.5
(-1.7)
P 		368.8
(3)
P 		101.6
(-3)
P 		162.1
(-1.6)
P 		251.4
(0.4)
P 		239.6
(0.1)
P 		267
B 337.2
(3)
P 		303.7
(2.1)
P 		101.6
(-3)
P 		182.1
(-0.9)
P 		314.3
(2.4)
P 		305.9
(2.2)
P 		236
C 400.6
(3)
P 		250
(-0.4)
P 		213.5
(-1.2)
P 		131.5
(-3)
P 		289.3
(0.5)
P 		264.8
(-0)
P 		269
avr 299.8
(2.7) 		307.5
(3) 		138.9
(-3) 		158.6
(-2.3) 		285
(2.2) 		270.1
(1.7) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192246_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3872
Sequence Type Exemplar sequence
Representative Public ID C06C3.1 NCBI
Target Description C06C3.1 /REP_DB=WormBase Gene ID /WP=CE20486 /GEN=mel-11 /TR=Q17718 /GB=CAA87782.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ankyrin-like repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063593(11), NM_001026756(11), NM_001026757(11), NM_001026758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063593 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-11) (mel-11) mRNA, complete cds. 11/11 A 
NM_001026756 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-11) (mel-11) mRNA, complete cds. 11/11 None
NM_001026757 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-11) (mel-11) mRNA, complete cds. 11/11 None
NM_001026758 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-11) (mel-11) mRNA, complete cds. 11/11 None
SNAP00000008805 ENSEMBL cdna:SNAP chromosome:CEL140:II:9361956:9368566:1 11/11 None
C06C3.1b ENSEMBL cdna:known chromosome:CEL140:II:9358446:9368566:1 gene:C06C3.1 11/11 None
C06C3.1c ENSEMBL cdna:known chromosome:CEL140:II:9358446:9368566:1 gene:C06C3.1 11/11 None
C06C3.1a ENSEMBL cdna:known chromosome:CEL140:II:9358446:9369000:1 gene:C06C3.1 11/11 A 
C06C3.1d ENSEMBL cdna:known chromosome:CEL140:II:9358446:9368566:1 gene:C06C3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008823 8/11 Cross Hyb Matching Probes None
GENEFINDER00000008824 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9358442-9368563(+) 97.71 100.0
Public Domain and Genome References
Ensembl C06C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87782 Hypothetical protein C06C3.1a [Caenorhabditis elegans] emb|CAA85318.1| Hypothetical protein C06C3.1a [Caenorhabditis elegans] ref|NP_495994.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] gb|AAB47273.1| MEL-11 [Caenorhabditis elegans] 0.0
blast CAD57699 Hypothetical protein C06C3.1b [Caenorhabditis elegans] emb|CAD57685.1| Hypothetical protein C06C3.1b [Caenorhabditis elegans] ref|NP_001021927.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] 0.0
blast CAH10845 Hypothetical protein C06C3.1d [Caenorhabditis elegans] emb|CAH04695.1| Hypothetical protein C06C3.1d [Caenorhabditis elegans] ref|NP_001021929.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] 0.0
blast CAD57700 Hypothetical protein C06C3.1c [Caenorhabditis elegans] emb|CAD57686.1| Hypothetical protein C06C3.1c [Caenorhabditis elegans] ref|NP_001021928.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.0061
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-9
Pfam IPR002110 EMBL-EBI Ankyrin 8.7E-12
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 7.9E-7
Sequence
Target Sequence 
>C. ELEGANS:192246_S_AT
tctttgccgccggcgagcaacggaatgtcctcgactcaacctctctctactcgaagtgca
attgttgctggactatcatctgcaccttcaatgcgaacaacagctccactatcatcaact
gcgacatcgtcaagatttatgccgtcctcttcattgtcatcaaatggatcatcagctaat
caacaaccgtcatcaatttatggattacaaagtcgtccaacagaaactaatctaaactac
aaagcacttttcgagaaggaacgatcggaatgtgaacgtcttcggcgagaaatggaagag
atgaggaggtcacagacggcggattcataccgtggagcatctacacaactcgcgtggcgt
gcccgaaacgcttctccatctgctcaaccacataatttatcggttgccaagtcgacatct
ctagcttcattcgacgagaatgaacgcaggagtatggagagaaaaatttcggatttggag
ttacaactcaagactgccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTGCCGCCGGCGAGCAACGGAA 662 613 2485 Antisense
GAGCAACGGAATGTCCTCGACTCAA 182 391 2499 Antisense
ACCTCTCTCTACTCGAAGTGCAATT 112 87 2523 Antisense
TGTTGCTGGACTATCATCTGCACCT 498 563 2547 Antisense
CAGCTCCACTATCATCAACTGCGAC 163 203 2585 Antisense
TCATCAGCTAATCAACAACCGTCAT 148 621 2653 Antisense
GAGGTCACAGACGGCGGATTCATAC 428 403 2790 Antisense
TCCATCTGCTCAACCACATAATTTA 332 591 2859 Antisense
TATCGGTTGCCAAGTCGACATCTCT 294 659 2882 Antisense
GACATCTCTAGCTTCATTCGACGAG 203 371 2898 Antisense
GAGTTACAACTCAAGACTGCCACCA 147 399 2962 Antisense
Sequence Source Affymetrix Proprietary Database