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[192245_s_at] Eukaryotic protein kinase domain

Description C01H6.9 /REP_DB=WormBase Gene ID /WP=CE07824 /TR=O17985 /GB=CAA95847.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Eukaryotic protein kinase domain
Cluster 6grp_high1_10_10 > 98      6grp_total > 99      4grp_total > 06      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 152.7
(0.7)
P 		85.1
(-3)
A 		113
(-1.5)
P 		194.5
(3)
P 		109
B 105
(3)
P 		103.1
(2.6)
M 		76.5
(-3)
P 		100.9
(2.1)
M 		29
C 112.9
(-0.5)
P 		87.4
(-3)
M 		148
(3)
P 		137.7
(2)
P 		61
avr 123.5
(0.6) 		91.9
(-3) 		112.5
(-0.6) 		144.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 140.3
(-2.5)
A 		132.3
(-3)
P 		132.6
(-3)
P 		144.9
(-2.2)
P 		210.1
(2.2)
P 		222.4
(3)
P 		90
B 94.4
(-3)
P 		103.6
(-2.7)
P 		150.1
(-1)
P 		148.8
(-1.1)
P 		262.7
(3)
P 		217.2
(1.4)
P 		168
C 99.2
(-2)
P 		79.2
(-3)
P 		79.5
(-3)
P 		109.2
(-1.5)
P 		168.1
(1.4)
P 		199.7
(3)
P 		121
avr 111.3
(-2.7) 		105
(-3) 		120.7
(-2.1) 		134.3
(-1.4) 		213.6
(3) 		213.1
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 55.6
(3)
P 		18.5
(-3)
A 		29.5
(-1.2)
P 		28.5
(-1.4)
P 		37
B 33.5
(3)
P 		25.5
(-0)
M 		17.7
(-3)
P 		21.5
(-1.6)
M 		16
C 37.4
(0)
P 		25.1
(-2.6)
M 		51.6
(3)
P 		23.2
(-3)
P 		28
avr 42.2
(3) 		23
(-3) 		32.9
(0.1) 		24.4
(-2.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 25.9
(-3)
A 		47
(0.4)
P 		28.9
(-2.5)
P 		36.7
(-1.3)
P 		63.4
(3)
P 		54.1
(1.5)
P 		38
B 32.9
(-3)
P 		34.5
(-2.9)
P 		36.5
(-2.7)
P 		39.4
(-2.5)
P 		106.7
(3)
P 		81
(0.9)
P 		74
C 36.8
(-0.9)
P 		24.2
(-2.5)
P 		20.2
(-3)
P 		22
(-2.8)
P 		54.4
(1.4)
P 		66.8
(3)
P 		47
avr 31.9
(-2.6) 		35.2
(-2.1) 		28.5
(-3) 		32.7
(-2.5) 		74.8
(3) 		67.3
(2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192245_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1579
Sequence Type Exemplar sequence
Representative Public ID C01H6.9 NCBI
Target Description C01H6.9 /REP_DB=WormBase Gene ID /WP=CE07824 /TR=O17985 /GB=CAA95847.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Eukaryotic protein kinase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059642 NCBI Caenorhabditis elegans C01H6.9 (C01H6.9) mRNA, complete cds. 11/11 None
SNAP00000008123 ENSEMBL cdna:SNAP chromosome:CEL140:I:7237708:7240179:-1 11/11 None
GENEFINDER00000008125 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7237708:7240179:-1 11/11 None
C01H6.9 ENSEMBL cdna:known chromosome:CEL140:I:7237567:7241251:-1 gene:C01H6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AF408763 2/11 Cross Hyb Matching Probes None
SNAP00000037115 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7237638-7241182(-) 100.0 100.0
Public Domain and Genome References
Gene Title Eukaryotic protein kinase domain
Ensembl C01H6.9
Entrez Gene 172462 Entrez gene
SwissProt O17985 EMBL-EBI
WormBase CE07824 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264550_AT haspin-related at
ATGENOME1:16254_AT haspin-related at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95786 Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAA95847.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAB10931.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] ref|NP_492043.1| C01H6.9 [Caenorhabditis elegans] 0.0
blast AAO27842 unknown protein [Caenorhabditis elegans] 0.0
blast CAE58677 Hypothetical protein CBG01851 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 0.026
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 0.026
Sequence
Target Sequence 
>C. ELEGANS:192245_S_AT
tattcttttcgtttcggcaaatggtggaatcgcactggaagattttgtccttgaaagtga
aaatgaactcttttcgatcattcaccaactcgttctttcaatgaatgcagcagaagcagc
tctcgaatttgaacacagagacttacatcttggtaatgtactgattgatcggaatggcgt
gaaagagctttattacactgttcatgggcagaaagtaccattaagtacccatggaattaa
agtcaatattattgatttcacattgagccgaatttccaaaggtgcgacaactgtctattg
ggacttggaaaacgacccagcaattttcgagggacaagatgatccacaattcgaagtata
tcgagaaatgagaaagaattgcaagagcaattggaagaaattttcgaggcgaacgaatct
catgtggattgtatacattgcaaatcgactgattgatacaaaaatctgccccaagggact
tcttaccgagaaacggagaatggagctcaaagtactgtttgaccgatttgccgagtttgg
ttcttgtggagaatcgttgaccaatgaggaattcttcagcgatttttacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTTTTCGTTTCGGCAAATGGT 454 659 2151 Antisense
TCATTCACCAACTCGTTCTTTCAAT 374 619 2228 Antisense
GAAGCAGCTCTCGAATTTGAACACA 530 341 2263 Antisense
GAGCTTTATTACACTGTTCATGGGC 36 387 2335 Antisense
GAGCCGAATTTCCAAAGGTGCGACA 690 383 2415 Antisense
GCGACAACTGTCTATTGGGACTTGG 214 287 2434 Antisense
GGGACTTGGAAAACGACCCAGCAAT 495 493 2450 Antisense
GATACAAAAATCTGCCCCAAGGGAC 313 351 2605 Antisense
AAGTACTGTTTGACCGATTTGCCGA 170 157 2660 Antisense
ATTTGCCGAGTTTGGTTCTTGTGGA 2 17 2676 Antisense
GAGGAATTCTTCAGCGATTTTTACG 354 405 2716 Antisense
Sequence Source Affymetrix Proprietary Database