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[192242_at] fatty acid synthase (N-terminus)

Description F32H2.6 /REP_DB=WormBase Gene ID /WP=CE09881 /TR=P91866 /GB=CAB04239.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid synthase (N-terminus)
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 35      6grp_total > 07      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 232.2
(3)
P 		225.9
(2.7)
P 		87
(-3)
P 		113
(-1.9)
P 		145
B 209.7
(3)
P 		153.3
(0.7)
P 		83
(-2.3)
P 		65.4
(-3)
A 		144
C 191.6
(3)
P 		156.3
(-1.4)
A 		143.6
(-3)
P 		161.8
(-0.7)
P 		48
avr 211.2
(3) 		178.5
(1.2) 		104.5
(-3) 		113.4
(-2.5) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 299.3
(3)
P 		126.4
(-1.3)
P 		197
(0.4)
P 		154.6
(-0.6)
P 		87.4
(-2.3)
P 		59
(-3)
A 		240
B 263.3
(3)
P 		177.2
(0.1)
P 		129.4
(-1.5)
P 		118.2
(-1.9)
P 		84.9
(-3)
P 		96.2
(-2.6)
P 		178
C 235
(3)
P 		174.2
(0.9)
P 		153.5
(0.2)
P 		116
(-1.1)
P 		58.9
(-3)
A 		108.7
(-1.3)
P 		176
avr 265.9
(3) 		159.3
(-0.4) 		160
(-0.4) 		129.6
(-1.3) 		77.1
(-3) 		88
(-2.7) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 84.6
(3)
P 		49
(-0.1)
P 		22.7
(-2.5)
P 		16.5
(-3)
P 		68
B 66.9
(3)
P 		37.9
(-0.3)
P 		19.2
(-2.4)
P 		13.9
(-3)
A 		53
C 63.4
(3)
P 		44.9
(-0.1)
A 		50.1
(0.8)
P 		27.3
(-3)
P 		36
avr 71.6
(3) 		43.9
(-0.2) 		30.7
(-1.7) 		19.2
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 55.2
(3)
P 		45
(1.5)
P 		42.9
(1.2)
P 		39.2
(0.6)
P 		26.4
(-1.2)
P 		14.4
(-3)
A 		41
B 91.6
(3)
P 		59
(-0.2)
P 		31.4
(-3)
P 		31.3
(-3)
P 		34.5
(-2.7)
P 		35.9
(-2.5)
P 		60
C 87.1
(3)
P 		53.2
(0)
P 		39.1
(-1.2)
P 		23.3
(-2.6)
P 		19.1
(-3)
A 		36.4
(-1.5)
P 		68
avr 78
(3) 		52.4
(0) 		37.8
(-1.7) 		31.3
(-2.5) 		26.7
(-3) 		28.9
(-2.7) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.968
Sequence Type Exemplar sequence
Representative Public ID F32H2.6 NCBI
Target Description F32H2.6 /REP_DB=WormBase Gene ID /WP=CE09881 /TR=P91866 /GB=CAB04239.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid synthase (N-terminus)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060020 NCBI Caenorhabditis elegans F32H2.6 (F32H2.6) mRNA, complete cds. 11/11 None
SNAP00000013735 ENSEMBL cdna:SNAP chromosome:CEL140:I:9003899:9007688:-1 9/11 None
GENEFINDER00000013768 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9006731:9007435:-1 11/11 None
F32H2.6 ENSEMBL cdna:known chromosome:CEL140:I:9006731:9007688:-1 gene:F32H2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9006661-9007619(-) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid synthase (N-terminus)
Ensembl F32H2.6
Entrez Gene 185214 Entrez gene
SwissProt P91866 EMBL-EBI
WormBase CE09881 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04247 Hypothetical protein F32H2.7 [Caenorhabditis elegans] ref|NP_492420.1| F32H2.7 [Caenorhabditis elegans] 0.0
blast CAB04239 Hypothetical protein F32H2.6 [Caenorhabditis elegans] ref|NP_492421.1| F32H2.6 [Caenorhabditis elegans] 1.0E-107
blast CAB04239 Hypothetical protein F32H2.6 [Caenorhabditis elegans] ref|NP_492421.1| F32H2.6 [Caenorhabditis elegans] 1.0E-93
blast CAB04239 Hypothetical protein F32H2.6 [Caenorhabditis elegans] ref|NP_492421.1| F32H2.6 [Caenorhabditis elegans] 1.0E-75
blast CAE67012 Hypothetical protein CBG12413 [Caenorhabditis briggsae] 6.0E-74
blast CAB04244 Hypothetical protein F32H2.5 [Caenorhabditis elegans] ref|NP_492417.1| F32H2.5 [Caenorhabditis elegans] 7.0E-54
blast CAE67008 Hypothetical protein CBG12408 [Caenorhabditis briggsae] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.6E-17
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.1E-11
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.6E-17
Sequence
Target Sequence 
>C. ELEGANS:192242_AT
aaaatgttcggtggcatgcttcttgcctgcgatgacgtggtgaccgaagatcaactcagt
tgggctccaggatttacagatctaccaaaaaaacggggaaagaaaaaagatttgaacaaa
ttcgacgctggtatccttcccggtacttcaaaacaaaataatcctatggatccacaagtc
cgactacttctcgaagcttcttgggaggcaatggttgatgcaggcataaatcccagaggc
cttcgtggatcccaaataggagattttgatgaatgtgcaactccaggaacatctggaacg
caaaaacaaaatcccgtgactgaaatggggtgcataatgtcggatactgtgccttctatg
ttctctaaccgtatttcatacacattcgatttgcaaggaccatctcattcggccgacaag
atca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGTTCGGTGGCATGCTTCTTG 322 131 97 Antisense
TCTTGCCTGCGATGACGTGGTGACC 588 617 117 Antisense
GATCAACTCAGTTGGGCTCCAGGAT 640 421 145 Antisense
GGGCTCCAGGATTTACAGATCTACC 491 493 158 Antisense
ACAAATTCGACGCTGGTATCCTTCC 49 111 212 Antisense
ATCCTATGGATCCACAAGTCCGACT 449 39 257 Antisense
AAGTCCGACTACTTCTCGAAGCTTC 145 155 272 Antisense
AAATCCCAGAGGCCTTCGTGGATCC 177 119 324 Antisense
GAATGTGCAACTCCAGGAACATCTG 113 333 367 Antisense
TAATGTCGGATACTGTGCCTTCTAT 359 633 431 Antisense
CCATCTCATTCGGCCGACAAGATCA 361 271 496 Antisense
Sequence Source Affymetrix Proprietary Database