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[192234_s_at] Sodium/phosphate transporter

Description C38C10.2 /REP_DB=WormBase Gene ID /WP=CE08647 /TR=SW:Q03567 /GB=CAA79549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 78      6grp_total > 76      4grp_total > 0      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 1125.7
(-1.3)
P 		967.8
(-3)
P 		1140.1
(-1.1)
P 		1515.6
(3)
P 		548
B 1183.9
(-1.2)
P 		1003.7
(-3)
P 		1105.8
(-2)
P 		1612.2
(3)
P 		609
C 1024.3
(-3)
P 		1062.3
(-2.6)
P 		1203.8
(-1.3)
P 		1657.7
(3)
P 		633
avr 1111.3
(-2) 		1011.3
(-3) 		1149.9
(-1.6) 		1595.2
(3) 		584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1165
1 2 3 4 5 6 range
A 1244.7
(-1.7)
P 		1049.4
(-3)
P 		1174.4
(-2.2)
P 		1191.7
(-2)
P 		1605
(0.8)
P 		1935.2
(3)
P 		886
B 1343.5
(-2.4)
P 		1279.8
(-3)
P 		1571.1
(-0.4)
P 		1467.9
(-1.3)
P 		1455.2
(-1.4)
P 		1948.5
(3)
P 		669
C 1016.8
(-3)
P 		1283.9
(-1.6)
P 		1416.2
(-0.9)
P 		1607
(0)
P 		1387.6
(-1.1)
P 		2181.9
(3)
P 		1165
avr 1201.7
(-3) 		1204.4
(-3) 		1387.2
(-1.6) 		1422.2
(-1.4) 		1482.6
(-0.9) 		2021.9
(3) 		820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 409.9
(3)
P 		210.1
(-3)
P 		298
(-0.4)
P 		221.9
(-2.6)
P 		200
B 377.5
(3)
P 		247.9
(-3)
P 		256.2
(-2.6)
P 		343.6
(1.4)
P 		130
C 339.1
(-0.4)
P 		305.4
(-1.9)
P 		419.6
(3)
P 		279.5
(-3)
P 		140
avr 375.5
(3) 		254.5
(-3) 		324.6
(0.5) 		281.7
(-1.7) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 229.5
(-3)
P 		373.2
(0.4)
P 		255.8
(-2.4)
P 		302.2
(-1.3)
P 		484.3
(3)
P 		471.2
(2.7)
P 		255
B 467.5
(-1.5)
P 		426
(-2.2)
P 		381.5
(-3)
P 		388.8
(-2.9)
P 		591.2
(0.6)
P 		726.6
(3)
P 		345
C 376.9
(-2.2)
P 		391.8
(-2)
P 		360.4
(-2.5)
P 		323.2
(-3)
P 		449
(-1.1)
P 		730.4
(3)
P 		407
avr 358
(-2.5) 		397
(-1.8) 		332.6
(-3) 		338.1
(-2.9) 		508.2
(0.4) 		642.7
(3) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192234_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6048
Sequence Type Exemplar sequence
Representative Public ID C38C10.2 NCBI
Target Description C38C10.2 /REP_DB=WormBase Gene ID /WP=CE08647 /TR=SW:Q03567 /GB=CAA79549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066664 NCBI Caenorhabditis elegans C38C10.2 (C38C10.2) mRNA, complete cds. 11/11 None
SNAP00000012404 ENSEMBL cdna:SNAP chromosome:CEL140:III:9387729:9389928:-1 11/11 None
GENEFINDER00000012411 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9387729:9389928:-1 11/11 None
C38C10.2.2 ENSEMBL cdna:known chromosome:CEL140:III:9387500:9390005:-1 gene:C38C10.2 11/11 None
C38C10.2.1 ENSEMBL cdna:known chromosome:CEL140:III:9387500:9390003:-1 gene:C38C10.2 11/11 None
C38C10.2.3 ENSEMBL cdna:known chromosome:CEL140:III:9387504:9390004:-1 gene:C38C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9387724-9389405(-) 98.31 98.31
Public Domain and Genome References
Gene Title Sodium/phosphate transporter
Ensembl C38C10.2
Entrez Gene 176317 Entrez gene
SwissProt Q03567 EMBL-EBI
WormBase CE08647 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13335_AT inorganic phosphate transporter, putative at
ATH1-121501:266672_AT inorganic phosphate transporter, putative at
CANINE_2:CFA.19416.1.S1_AT similar to Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid cotransporter) (AST) (Membrane glycoprotein HP59) cfa
CANINE_2:CFA.19416.1.S1_S_AT similar to Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid cotransporter) (AST) (Membrane glycoprotein HP59) cfa
CANINE_2:CFA.20895.1.S1_S_AT similar to Sialin (Solute carrier family 17 member 5) (Sodium/sialic acid cotransporter) (AST) (Membrane glycoprotein HP59) cfa
CHICKEN:GGAAFFX.10140.2.S1_S_AT solute carrier family 17 (anion/sugar transporter), member 5 gga
CHICKEN:GGAAFFX.11943.1.S1_S_AT solute carrier family 17 (anion/sugar transporter), member 5 gga
HG-U133_PLUS_2:221041_S_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U133A:221041_S_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-FOCUS:221041_S_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U133A_2:221041_S_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HU35KSUBA:W31738_S_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HU35KSUBB:RC_N90239_R_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
U133_X3P:G6912665_3P_A_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
U133_X3P:HS.117865.1.S2_3P_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U133_PLUS_2:223441_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U133B:223441_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U95C:65644_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
HG-U95E:88617_AT solute carrier family 17 (anion/sugar transporter), member 5 hs
MG-U74BV2:109013_AT solute carrier family 17 (anion/sugar transporter), member 5 mm
MG-U74CV2:137014_R_AT solute carrier family 17 (anion/sugar transporter), member 5 mm
MOE430B:1429116_AT solute carrier family 17 (anion/sugar transporter), member 5 mm
MOUSE430_2:1429116_AT solute carrier family 17 (anion/sugar transporter), member 5 mm
MG-U74CV2:137013_I_AT solute carrier family 17 (anion/sugar transporter), member 5 mm
RG-U34B:RC_AA900983_AT solute carrier family 17 (anion/sugar transporter), member 5 (predicted) rn
RAE230A:1376605_AT solute carrier family 17 (anion/sugar transporter), member 5 (predicted) rn
RAT230_2:1376605_AT solute carrier family 17 (anion/sugar transporter), member 5 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA79549 Hypothetical protein C38C10.2 [Caenorhabditis elegans] ref|NP_499065.1| C38C10.2 [Caenorhabditis elegans] sp|Q03567|YLD2_CAEEL Hypothetical protein C38C10.2 in chromosome III 0.0
blast S28286 hypothetical protein C38C10.2 - Caenorhabditis elegans 0.0
blast CAE65225 Hypothetical protein CBG10101 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499065.1 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
C38C10.2.2 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
C38C10.2.1 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
C38C10.2.3 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
SNAP00000012404 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
GENEFINDER00000012411 10 13-32,113-132,139-161,176-195,202-224,309-331,343-365,375-397,404-426,441-463
Sequence
Target Sequence 
>C. ELEGANS:192234_S_AT
gatgcttgtatctcttccatcattcttaaaggatgtccttggattgaatctttcatctct
tggcgccgttgcttccattccatacattgcatactttttggctattaatgcaggtggagt
ccttgctgacacactacgatcaaagggaatcctctcaacattgaacaccagaagagctgc
tatgctggttgctctcatcggacagggaattttcctcgtggcttcaggttactgtggatg
tggacaagatgtcctcgtcataatcttcattacctgcggtatggctatttctggccttca
gtatgctggatttgtcgtgaactacctcgaaatcgccccaccattctctggaacagtgat
gggaactggaaatactatctccgcacttgctggtatcatttcaccagctgtcagcagcta
cttgacacctaatggtactcaagaagaatggcaaatggttctatggttgactgctggaat
tttgacaattggagctctgttgttctcaatctttgcatctggagaagtacaaccatgggc
taagctgaccgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTGTATCTCTTCCATCATTC 502 413 879 Antisense
GCTTCCATTCCATACATTGCATACT 58 307 949 Antisense
AGTCCTTGCTGACACACTACGATCA 492 59 996 Antisense
GTTGCTCTCATCGGACAGGGAATTT 599 439 1066 Antisense
GAATTTTCCTCGTGGCTTCAGGTTA 596 323 1085 Antisense
GTCCTCGTCATAATCTTCATTACCT 264 477 1129 Antisense
GGTATGGCTATTTCTGGCCTTCAGT 393 505 1156 Antisense
GCTGGATTTGTCGTGAACTACCTCG 225 293 1183 Antisense
TATCTCCGCACTTGCTGGTATCATT 550 657 1254 Antisense
GAGCTCTGTTGTTCTCAATCTTTGC 686 387 1370 Antisense
CAACCATGGGCTAAGCTGACCGCCG 223 187 1408 Antisense
Sequence Source Affymetrix Proprietary Database