[Home] | [Total List]

[192229_s_at] GTP-binding protein

Description Y38C9A.2 /REP_DB=WormBase Gene ID /WP=CE21577 /GEN=cgp-1 /TR=Q9UAZ4 /GB=AAD14761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 75      6grp_total > 39      4grp_total > 63      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 601
1 2 3 4 range
A 1080.4
(3)
P 		841.2
(-0)
P 		788.8
(-0.7)
P 		603.9
(-3)
P 		477
B 1205.1
(3)
P 		680
(-3)
P 		786.4
(-1.8)
P 		694.7
(-2.8)
P 		525
C 943.3
(3)
P 		613.8
(-3)
P 		845.3
(1.2)
P 		644.8
(-2.4)
P 		330
avr 1076.3
(3) 		711.7
(-2.1) 		806.8
(-0.8) 		647.8
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 805.4
(0.1)
P 		776.4
(-0.3)
P 		548.8
(-3)
P 		935.8
(1.7)
P 		984.3
(2.2)
P 		1046.9
(3)
P 		498
B 903.5
(1.4)
P 		843.8
(0.7)
P 		557.3
(-3)
P 		911.5
(1.5)
P 		1025.1
(3)
P 		893.5
(1.3)
P 		468
C 1266.3
(3)
P 		823.9
(-1.2)
P 		811
(-1.3)
P 		632
(-3)
P 		1159.6
(2)
P 		741.6
(-2)
P 		634
avr 991.7
(2.1) 		814.7
(-0.5) 		639
(-3) 		826.4
(-0.3) 		1056.3
(3) 		894
(0.7) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 393.4
(3)
P 		182.6
(-1.1)
P 		206.2
(-0.7)
P 		88.4
(-3)
P 		305
B 384.3
(3)
P 		167.9
(-2.5)
P 		182.2
(-2.1)
P 		148
(-3)
P 		236
C 312.3
(3)
P 		176.5
(-1)
P 		294.6
(2.5)
P 		108.7
(-3)
P 		204
avr 363.3
(3) 		175.7
(-1.5) 		227.7
(-0.3) 		115
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 148.5
(-2)
P 		276.1
(2.3)
P 		119.5
(-3)
P 		237.4
(1)
P 		297
(3)
P 		254.9
(1.6)
P 		178
B 314.4
(0.8)
P 		280.9
(0.1)
P 		135.3
(-3)
P 		241.4
(-0.7)
P 		416.5
(3)
P 		333.2
(1.2)
P 		281
C 469.4
(3)
P 		251.4
(-0.8)
P 		206.4
(-1.6)
P 		127.1
(-3)
P 		375.2
(1.3)
P 		248.2
(-0.9)
P 		342
avr 310.8
(1.5) 		269.5
(0.3) 		153.7
(-3) 		202
(-1.6) 		362.9
(3) 		278.8
(0.6) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192229_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14979
Sequence Type Exemplar sequence
Representative Public ID Y38C9A.2 NCBI
Target Description Y38C9A.2 /REP_DB=WormBase Gene ID /WP=CE21577 /GEN=cgp-1 /TR=Q9UAZ4 /GB=AAD14761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070736 NCBI Caenorhabditis elegans Caenorhabditis GTP-binding Protein family member (cgp-1) (cgp-1) mRNA, complete cds. 11/11 A 
SNAP00000037390 ENSEMBL cdna:SNAP chromosome:CEL140:V:118291:122580:-1 11/11 None
GENEFINDER00000037393 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:118291:122580:-1 11/11 None
Y38C9A.2.2 ENSEMBL cdna:known chromosome:CEL140:V:118042:122794:-1 gene:Y38C9A.2 11/11 None
Y38C9A.2.1 ENSEMBL cdna:known chromosome:CEL140:V:118042:122617:-1 gene:Y38C9A.2 11/11 None
Y38C9A.2.3 ENSEMBL cdna:known chromosome:CEL140:V:118053:122619:-1 gene:Y38C9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:118290-122580(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Gene Symbol cgp-1
Ensembl Y38C9A.2
Entrez Gene 178540 Entrez gene
SwissProt Q18905 EMBL-EBI
WormBase CE21577 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2946.1.S1_AT similar to GTP binding protein 1 cfa
DROSOPHILA_2:1640341_S_AT dm
DROSGENOME1:144194_AT dm
CHICKEN:GGA.7546.2.S1_S_AT GTP binding protein 1 gga
CHICKEN:GGAAFFX.11492.1.S1_S_AT GTP binding protein 1 gga
HG-U95AV2:41262_AT GTP binding protein 1 hs
HG-U133_PLUS_2:205276_S_AT GTP binding protein 1 hs
HG-U133A:205276_S_AT GTP binding protein 1 hs
HG-U133A_2:205276_S_AT GTP binding protein 1 hs
HG-U133_PLUS_2:219357_AT GTP binding protein 1 hs
HG-U133A:219357_AT GTP binding protein 1 hs
HG-U133A_2:219357_AT GTP binding protein 1 hs
HU35KSUBA:RC_AA397818_AT GTP binding protein 1 hs
HU35KSUBC:RC_N50885_AT GTP binding protein 1 hs
HUGENEFL:U87964_AT GTP binding protein 1 hs
U133_X3P:G7661735_3P_AT GTP binding protein 1 hs
U133_X3P:G4758489_3P_A_AT GTP binding protein 1 hs
U133_X3P:HS.30002.4.A1_3P_AT GTP binding protein 1 hs
U133_X3P:HS.283677.0.S2_3P_AT GTP binding protein 1 hs
HG-U133A_2:205275_AT GTP binding protein 1 hs
HG-U133_PLUS_2:205275_AT GTP binding protein 1 hs
HG-U133A:205275_AT GTP binding protein 1 hs
HG-U133_PLUS_2:226359_AT GTP binding protein 1 hs
HG-U133B:226359_AT GTP binding protein 1 hs
HG-U95B:44086_AT GTP binding protein 1 hs
HG-U95B:44087_AT GTP binding protein 1 hs
HG-U133A_2:205274_AT GTP binding protein 1 hs
HG-FOCUS:205274_AT GTP binding protein 1 hs
HG-U133_PLUS_2:205274_AT GTP binding protein 1 hs
HG-U133A:205274_AT GTP binding protein 1 hs
HG-U95AV2:41263_AT GTP binding protein 1 hs
HG-U95E:80614_AT GTP binding protein 1 hs
HU35KSUBC:RC_D20505_AT GTP binding protein 1 hs
MOE430A:1450022_AT GTP binding protein 1 mm
MOUSE430A_2:1450022_AT GTP binding protein 1 mm
MOUSE430_2:1450022_AT GTP binding protein 1 mm
MU11KSUBA:AA254016_S_AT GTP binding protein 1 mm
MG-U74AV2:103436_AT GTP binding protein 1 mm
MG-U74AV2:161683_R_AT GTP binding protein 1 mm
MOE430A:1450023_AT GTP binding protein 1 mm
MOUSE430A_2:1450023_AT GTP binding protein 1 mm
MOUSE430_2:1450023_AT GTP binding protein 1 mm
MU19KSUBA:TC16211_AT GTP binding protein 1 (Gtpbp1), mRNA mm
MU19KSUBA:TC16211_G_AT GTP binding protein 1 (Gtpbp1), mRNA mm
MU19KSUBB:TC33726_AT GTP binding protein 1 (Gtpbp1), mRNA mm
MU19KSUBC:TC39064_AT GTP binding protein 1 (Gtpbp1), mRNA mm
RAE230A:1375447_AT GTP binding protein 1 (predicted) rn
RAT230_2:1375447_AT GTP binding protein 1 (predicted) rn
RAE230B:1379905_AT GTP binding protein 1 (predicted) rn
RAT230_2:1379905_AT GTP binding protein 1 (predicted) rn
RAE230A:1398985_AT GTP binding protein 1 (predicted) rn
RAT230_2:1398985_AT GTP binding protein 1 (predicted) rn
RG-U34C:RC_AI072081_AT GTP binding protein 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14761 Caenorhabditis gtp-binding protein protein 1 [Caenorhabditis elegans] ref|NP_503137.1| Caenorhabditis GTP-binding Protein family member (cgp-1) [Caenorhabditis elegans] sp|Q18905|CGP1_CAEEL GTP-binding protein cgp-1 0.0
blast AAA86431 GTP-binding protein 0.0
blast CAE62364 Hypothetical protein CBG06448 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 4.6E-14
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 7.1E-13
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.8E-21
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 4.6E-14
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.8E-21
Sequence
Target Sequence 
>C. ELEGANS:192229_S_AT
ggaccaacttccaacggtgatttcatgccgattccgattaaatcgattcatcgtaaacga
atgcctgttggaattgtcaagtgtggacagtctgcatcgtttgcgctcaaaaaaatcccg
aaaaaagacgtgcgaaaaggaatggttctggtggatccgaaggtgaaaccggtggcgagt
atggtttttgaagcggaaattcttgtacttcatcacccgacaactatcaaaccgaattat
caagctatgcttcatattggatcggttcgtcagactgcgacgttggtttccatgggaaag
gaagtgcttcgaactggcgaccgtgataaagtgcaattcaaattcattcgtcagcccgaa
tatattcgtccgggtaccaaaatggtattccgcgagggacgtactaaagccgtcggaaca
gttagctcggttgtaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCAACTTCCAACGGTGATTTCA 570 521 1234 Antisense
GGTGATTTCATGCCGATTCCGATTA 362 499 1249 Antisense
TGTGGACAGTCTGCATCGTTTGCGC 304 555 1315 Antisense
GGAAATTCTTGTACTTCATCACCCG 130 527 1428 Antisense
TTCATCACCCGACAACTATCAAACC 206 685 1442 Antisense
TATTGGATCGGTTCGTCAGACTGCG 74 663 1488 Antisense
TCAGACTGCGACGTTGGTTTCCATG 523 621 1503 Antisense
TGCTTCGAACTGGCGACCGTGATAA 183 579 1538 Antisense
GCAATTCAAATTCATTCGTCAGCCC 20 323 1566 Antisense
ATGGTATTCCGCGAGGGACGTACTA 483 1 1615 Antisense
GGAACAGTTAGCTCGGTTGTACCAC 405 527 1648 Antisense
Sequence Source Affymetrix Proprietary Database