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[192227_s_at]

Description T01D1.2B /REP_DB=WormBase Gene ID /WP=CE28070 /GEN=etr-1 /TR=P91414 /GB=AAB37882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 66      6grp_total > 04      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 1779.2
(3)
P 		1709.9
(1.4)
P 		1711
(1.4)
P 		1515.5
(-3)
P 		264
B 1938.6
(3)
P 		1735
(-1.7)
P 		1738.1
(-1.6)
P 		1677.3
(-3)
P 		261
C 1650.2
(0.1)
P 		1746.8
(3)
P 		1724.5
(2.3)
P 		1546.3
(-3)
P 		201
avr 1789.3
(3) 		1730.6
(1.3) 		1724.5
(1.1) 		1579.7
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 1552
(3)
P 		1550.9
(3)
P 		1237.5
(-3)
P 		1427.5
(0.6)
P 		1434.2
(0.8)
P 		1367.5
(-0.5)
P 		315
B 1709.7
(3)
P 		1504.8
(0.4)
P 		1398.6
(-0.9)
P 		1371.3
(-1.3)
P 		1471.7
(-0)
P 		1236.7
(-3)
P 		473
C 1488.8
(1)
P 		1421
(-0.6)
P 		1572.7
(3)
P 		1414.1
(-0.8)
P 		1452.7
(0.1)
P 		1321.4
(-3)
P 		251
avr 1583.5
(3) 		1492.2
(1) 		1402.9
(-0.9) 		1404.3
(-0.9) 		1452.9
(0.2) 		1308.5
(-3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 647.8
(3)
P 		371.2
(-0.9)
P 		447.3
(0.2)
P 		221.8
(-3)
P 		426
B 618.2
(3)
P 		428.5
(-1.4)
P 		402.8
(-2)
P 		357.4
(-3)
P 		261
C 546.3
(2)
P 		502.2
(1.3)
P 		601.1
(3)
P 		260.7
(-3)
P 		340
avr 604.1
(3) 		434
(-0.1) 		483.7
(0.8) 		280
(-3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 286.1
(-2.6)
P 		551.6
(3)
P 		269.5
(-3)
P 		362
(-1)
P 		432.8
(0.5)
P 		332.9
(-1.7)
P 		282
B 594.9
(2.9)
P 		500.9
(0.7)
P 		339.6
(-3)
P 		363.2
(-2.5)
P 		597.9
(3)
P 		461.2
(-0.2)
P 		258
C 551.8
(3)
P 		433.6
(0.3)
P 		400.3
(-0.4)
P 		284.4
(-3)
P 		470.1
(1.2)
P 		442.4
(0.5)
P 		267
avr 477.6
(2.2) 		495.4
(2.8) 		336.5
(-3) 		336.5
(-3) 		500.3
(3) 		412.2
(-0.2) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192227_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4178
Sequence Type Exemplar sequence
Representative Public ID T01D1.2B NCBI
Target Description T01D1.2B /REP_DB=WormBase Gene ID /WP=CE28070 /GEN=etr-1 /TR=P91414 /GB=AAB37882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061272(11), NM_001027124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061272 NCBI Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds. 11/11 A 
NM_001027124 NCBI Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds. 11/11 None
SNAP00000043213 ENSEMBL cdna:SNAP chromosome:CEL140:II:163142:169679:1 11/11 None
GENEFINDER00000043224 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:162992:169679:1 10/11 None
T01D1.2a.4 ENSEMBL cdna:known chromosome:CEL140:II:162374:170628:1 gene:T01D1.2 11/11 None
T01D1.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:163084:170628:1 gene:T01D1.2 11/11 A 
T01D1.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:163086:170628:1 gene:T01D1.2 11/11 A 
T01D1.2a.3 ENSEMBL cdna:known chromosome:CEL140:II:163086:170152:1 gene:T01D1.2 11/11 A 
T01D1.2a.5 ENSEMBL cdna:known chromosome:CEL140:II:163086:170606:1 gene:T01D1.2 11/11 None
T01D1.2b ENSEMBL cdna:known chromosome:CEL140:II:164641:169679:1 gene:T01D1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027125 7/11 Cross Hyb Matching Probes None
T01D1.2c 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173401 3 2 NM_001027124 172031_x_at (10), 192227_s_at (11)
NM_061272 172031_x_at (11), 192227_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:164699-169679(+) 96.5 96.5
Public Domain and Genome References
Ensembl T01D1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37881 Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] ref|NP_493673.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans] 0.0
blast CAE62798 Hypothetical protein CBG06972 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-16
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.9E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.0E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.2E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:192227_S_AT
aattcgacgctatcacaatggcacagattgctcatcaacagcaaatgctggcactccaag
ggttcgccgtgcaacagggcgctccaagccaacagcaacaaggacttgccggtggaatgg
ctggtgcaaagactacatcaccagtcgctgcatcgctcgccaatcatcaacagattgcgt
tgaccccatttgcaggaggagccgccgctttggatcatttccaggctatgcagcaatatg
cactccttgcaaatcttcaagcaaccggcggcgttggcgtgcaggccacaacctcagcag
ctcaaatggttggaaacggtgacgtaaagggtccagacggtgcgaatctcttcatatatc
acttaccacaagattttggagacagtgacttgataaatacgtttgcgccgtttggtggaa
tactgtcggcgaaggttttcatcgataaagtcacgaatttgtcgaaatgctttggtttcg
tctcgtatgagaacgctcagtcagctacaaacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGACGCTATCACAATGGCACA 596 177 668 Antisense
GCAAATGCTGGCACTCCAAGGGTTC 77 319 708 Antisense
GACTTGCCGGTGGAATGGCTGGTGC 527 371 770 Antisense
CAAAGACTACATCACCAGTCGCTGC 128 193 794 Antisense
GTTGACCCCATTTGCAGGAGGAGCC 84 439 846 Antisense
CGCCGCTTTGGATCATTTCCAGGCT 404 255 870 Antisense
TGCAAATCTTCAAGCAACCGGCGGC 422 575 915 Antisense
GAATCTCTTCATATATCACTTACCA 365 329 1011 Antisense
TGCGCCGTTTGGTGGAATACTGTCG 653 583 1071 Antisense
AATGCTTTGGTTTCGTCTCGTATGA 380 165 1133 Antisense
GAACGCTCAGTCAGCTACAAACGCA 417 347 1158 Antisense
Sequence Source Affymetrix Proprietary Database