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[192219_at] monocarboxylate transporter like

Description C49F8.2 /REP_DB=WormBase Gene ID /WP=CE05457 /TR=Q18712 /GB=CAA94126.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=monocarboxylate transporter like
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 08      4grp_total > 46      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 154
(3)
P 		97.1
(-2.5)
P 		91.8
(-3)
P 		91.8
(-3)
P 		62
B 149.7
(3)
P 		120.5
(0.7)
P 		72.9
(-3)
P 		116.5
(0.4)
P 		77
C 163.9
(3)
P 		132
(0.7)
M 		79.5
(-3)
P 		92
(-2.1)
P 		84
avr 155.9
(3) 		116.5
(-0.2) 		81.4
(-3) 		100.1
(-1.5) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 161.3
(3)
P 		142
(1.2)
P 		97.2
(-3)
P 		109.2
(-1.9)
P 		127.4
(-0.2)
P 		147.9
(1.7)
P 		64
B 121.1
(0.6)
P 		140.3
(3)
P 		128.6
(1.6)
P 		120.2
(0.5)
P 		102.6
(-1.6)
P 		91.4
(-3)
P 		49
C 262.3
(3)
P 		115.6
(-2.5)
P 		162
(-0.8)
P 		145.3
(-1.4)
P 		144.8
(-1.4)
P 		102.7
(-3)
P 		160
avr 181.6
(3) 		132.6
(-1.3) 		129.3
(-1.6) 		124.9
(-2) 		124.9
(-2) 		114
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 56.1
(3)
P 		21.1
(-1.9)
P 		24
(-1.5)
P 		13.4
(-3)
P 		43
B 47.7
(3)
P 		29.8
(-0.5)
P 		16.9
(-3)
P 		24.8
(-1.5)
P 		31
C 54.2
(3)
P 		37.9
(0.5)
M 		27.7
(-1.1)
P 		15.5
(-3)
P 		39
avr 52.7
(3) 		29.6
(-1) 		22.9
(-2.1) 		17.9
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 29.7
(-1.3)
P 		50.5
(3)
P 		21.2
(-3)
P 		27.7
(-1.7)
P 		38.4
(0.5)
P 		36
(0)
P 		29
B 42.1
(1.2)
P 		46.7
(3)
P 		31.2
(-3)
P 		31.8
(-2.8)
P 		41.7
(1.1)
P 		34.1
(-1.9)
P 		16
C 97.2
(3)
P 		35.3
(-2.5)
P 		41.2
(-1.9)
P 		29.2
(-3)
P 		46.8
(-1.4)
P 		34.4
(-2.5)
P 		68
avr 56.3
(3) 		44.2
(0.3) 		31.2
(-2.6) 		29.6
(-3) 		42.3
(-0.1) 		34.8
(-1.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17471
Sequence Type Exemplar sequence
Representative Public ID C49F8.2 NCBI
Target Description C49F8.2 /REP_DB=WormBase Gene ID /WP=CE05457 /TR=Q18712 /GB=CAA94126.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=monocarboxylate transporter like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077824 NCBI Caenorhabditis elegans C49F8.2 (C49F8.2) mRNA, complete cds. 11/11 None
SNAP00000013056 ENSEMBL cdna:SNAP chromosome:CEL140:X:13371944:13376693:-1 11/11 None
GENEFINDER00000013063 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13371944:13376693:-1 11/11 None
C49F8.2 ENSEMBL cdna:known chromosome:CEL140:X:13371473:13376912:-1 gene:C49F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13371943-13377295(-) 100.0 100.0
Public Domain and Genome References
Gene Title monocarboxylate transporter like
Ensembl C49F8.2
Entrez Gene 181458 Entrez gene
SwissProt Q18712 EMBL-EBI
WormBase CE31456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94126 Hypothetical protein C49F8.2 [Caenorhabditis elegans] ref|NP_510225.2| C49F8.2 [Caenorhabditis elegans] 0.0
blast CAE63373 Hypothetical protein CBG07785 [Caenorhabditis briggsae] 0.0
blast XP_624883 PREDICTED: similar to ENSANGP00000018326 [Apis mellifera] 3.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510225.2 12 76-98,113-135,142-164,168-190,202-224,234-253,548-570,585-607,614-631,641-663,675-697,702-724
C49F8.2 12 76-98,113-135,142-164,168-190,202-224,234-253,548-570,585-607,614-631,641-663,675-697,702-724
SNAP00000013056 12 76-98,113-135,142-164,168-190,202-224,234-253,548-570,585-607,614-631,641-663,675-697,702-724
GENEFINDER00000013063 12 76-98,113-135,142-164,168-190,202-224,234-253,548-570,585-607,614-631,641-663,675-697,702-724
Sequence
Target Sequence 
>C. ELEGANS:192219_AT
tggatgtgccatacgtctgtttttatgaatattcgattgacacactaaaaatggaggaat
ccgaagccaactacatttactattcgatcggtatcagcaacttcatcagtgtccttctct
tcggaacacttgccgactggacaaggaagcacattaccacgatctacgccagttcaatgg
ttggagttgggattactatcatgttctcgacaagaatcaactcactcgttgagctagtga
ttgtgggagtatgctttggagtgactatcaccagtaattatgttctgcagtcaattcttg
ttacaatatgttttgaggatgtgaacctcttccaagttgcatactccctgattgctatga
ttgaaggagttgcatctttgatcggacccccaatttttgctcttgttcgtgaagcaacgg
gaggctacaccgtggtgtttttcatttcgggtatttttgctctggcctctgggttctttg
gcttcatgttcagctacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGTGCCATACGTCTGTTTTTA 213 551 1808 Antisense
GAATCCGAAGCCAACTACATTTACT 373 327 1864 Antisense
ATCAGCAACTTCATCAGTGTCCTTC 323 29 1900 Antisense
TCCTTCTCTTCGGAACACTTGCCGA 530 591 1919 Antisense
GGAAGCACATTACCACGATCTACGC 474 531 1952 Antisense
GATGTGAACCTCTTCCAAGTTGCAT 430 409 2125 Antisense
CAAGTTGCATACTCCCTGATTGCTA 523 181 2140 Antisense
AGGAGTTGCATCTTTGATCGGACCC 588 55 2172 Antisense
CCCCAATTTTTGCTCTTGTTCGTGA 692 261 2195 Antisense
GCAACGGGAGGCTACACCGTGGTGT 531 305 2221 Antisense
TTTGGCTTCATGTTCAGCTACGAAA 54 667 2284 Antisense
Sequence Source Affymetrix Proprietary Database