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[192217_s_at] zinc-finger containing protein

Description C52E12.1 /REP_DB=WormBase Gene ID /WP=CE04262 /TR=Q18782 /GB=AAA93457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger containing protein
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 40      6grp_total > 27      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 895.5
(3)
P 		491.9
(-1.2)
P 		611.7
(0.1)
P 		317.5
(-3)
P 		578
B 674.3
(3)
P 		500.2
(-0.3)
P 		565.7
(1)
P 		355.2
(-3)
P 		319
C 847.9
(3)
P 		505
(-1.3)
P 		442
(-2.1)
P 		372.6
(-3)
P 		475
avr 805.9
(3) 		499
(-1) 		539.8
(-0.5) 		348.4
(-3) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 837.5
(3)
P 		629
(0.5)
P 		346.8
(-3)
P 		434
(-1.9)
P 		558.3
(-0.4)
P 		660.3
(0.8)
P 		491
B 869.2
(3)
P 		664
(-0.1)
P 		466
(-3)
P 		662.2
(-0.1)
P 		508.3
(-2.4)
P 		548.4
(-1.8)
P 		403
C 629.2
(0.6)
P 		789.5
(3)
P 		636.5
(0.7)
P 		392.6
(-3)
P 		512.8
(-1.2)
P 		511.2
(-1.2)
P 		397
avr 778.6
(3) 		694.2
(1.3) 		483.1
(-3) 		496.3
(-2.7) 		526.5
(-2.1) 		573.3
(-1.2) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 326
(3)
P 		106.8
(-1.7)
P 		159.9
(-0.6)
P 		46.5
(-3)
P 		280
B 215
(3)
P 		123.5
(-0.9)
P 		131.1
(-0.6)
P 		75.7
(-3)
P 		139
C 280.7
(3)
P 		145.2
(-0.7)
P 		154
(-0.5)
P 		62.8
(-3)
P 		218
avr 273.9
(3) 		125.2
(-1.2) 		148.3
(-0.6) 		61.7
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 154.4
(0.2)
P 		223.7
(3)
P 		75.5
(-3)
P 		110.1
(-1.6)
P 		168.5
(0.8)
P 		160.8
(0.5)
P 		148
B 302.4
(3)
P 		221
(0.4)
P 		113.2
(-3)
P 		175.4
(-1)
P 		206.5
(-0)
P 		204.5
(-0.1)
P 		189
C 233.2
(2.7)
P 		240.9
(3)
P 		162
(0.1)
P 		79
(-3)
P 		165.9
(0.2)
P 		171.1
(0.4)
P 		162
avr 230
(3) 		228.5
(2.9) 		116.9
(-3) 		121.5
(-2.8) 		180.3
(0.4) 		178.8
(0.3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192217_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5827
Sequence Type Exemplar sequence
Representative Public ID C52E12.1 NCBI
Target Description C52E12.1 /REP_DB=WormBase Gene ID /WP=CE04262 /TR=Q18782 /GB=AAA93457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063038 NCBI Caenorhabditis elegans C52E12.1 (C52E12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036573 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7025745:7029815:1 11/11 None
C52E12.1.2 ENSEMBL cdna:known chromosome:CEL140:II:7025731:7030083:1 gene:C52E12.1 11/11 None
C52E12.1.1 ENSEMBL cdna:known chromosome:CEL140:II:7025733:7030083:1 gene:C52E12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036568 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7023390-7029811(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger containing protein
Ensembl C52E12.1
Entrez Gene 174148 Entrez gene
SwissProt Q18782 EMBL-EBI
WormBase CE32335 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN63429 Hypothetical protein C52E12.1 [Caenorhabditis elegans] ref|NP_495439.2| C52E12.1 [Caenorhabditis elegans] 0.0
blast T15826 hypothetical protein C52E12.1 - Caenorhabditis elegans 0.0
blast CAE66014 Hypothetical protein CBG11206 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.0E-5
Sequence
Target Sequence 
>C. ELEGANS:192217_S_AT
tccaccagtccatcattcgaatatcgagaagtcggagagttcggaatggacaatggcaaa
ctcaaagtctggagattcactaaaaaatgctcagctaatggcaaatcagaagaaaaataa
gaaaaataagaataacatggaaataccgtctgctaacaaagtgcctagttctcaaagttc
aattgttccatctgctccaaaagttgattcattgatagttgagaaagtagtagccaaaac
tgaacctaaaaacgacgaaaaccaagataaacctgatctctggaatatgccaaaacttcc
ttcaatgacttcaatgttctcatcattttctctttctggaatgttcgggatggggacttc
ctacagtgattcgtcatccatggctgcgccgcctccaggactcgagaatgttgttttaac
acctccacccggacttggattcccctcaccaaaatctgacgatatatcttttgcctcggc
tcctatactgtctcatgacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCAGTCCATCATTCGAATATC 316 589 2985 Antisense
ATACCGTCTGCTAACAAAGTGCCTA 333 21 3127 Antisense
AAGTGCCTAGTTCTCAAAGTTCAAT 340 155 3143 Antisense
AAAGTTCAATTGTTCCATCTGCTCC 250 121 3158 Antisense
GCCAAAACTTCCTTCAATGACTTCA 644 277 3273 Antisense
TTCTCATCATTTTCTCTTTCTGGAA 128 693 3301 Antisense
GATGGGGACTTCCTACAGTGATTCG 569 405 3333 Antisense
CCGCCTCCAGGACTCGAGAATGTTG 408 261 3373 Antisense
GAGAATGTTGTTTTAACACCTCCAC 469 391 3388 Antisense
TGACGATATATCTTTTGCCTCGGCT 169 571 3441 Antisense
GGCTCCTATACTGTCTCATGACGAT 164 537 3462 Antisense
Sequence Source Affymetrix Proprietary Database