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[192213_s_at]

Description Y57G11A.1 /REP_DB=WormBase Gene ID /WP=CE24472 /TR=O18221 /GB=CAB16496.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=LIM domain containing proteins
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 82      6grp_total > 74      4grp_total > 40      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 171.4
(-3)
P 		193.1
(-2.3)
P 		356.2
(3)
P 		254.3
(-0.3)
P 		185
B 111.3
(-3)
P 		319.9
(3)
P 		286.2
(2)
P 		227.8
(0.4)
P 		209
C 154.6
(-3)
P 		250
(0.3)
P 		329.4
(3)
P 		262.1
(0.7)
P 		175
avr 145.8
(-3) 		254.3
(0.7) 		323.9
(3) 		248.1
(0.4) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 378.1
(0.2)
P 		334.3
(-2.1)
P 		356.9
(-0.9)
P 		415.3
(2)
P 		315.8
(-3)
P 		434.3
(3)
P 		119
B 262.5
(-3)
P 		328.2
(-0)
P 		358.5
(1.3)
P 		380.3
(2.3)
P 		395.6
(3)
P 		372.9
(2)
P 		133
C 301.5
(-3)
P 		355.4
(-1.4)
P 		373.9
(-0.8)
P 		501.6
(3)
P 		378
(-0.7)
P 		416.4
(0.4)
P 		200
avr 314
(-3) 		339.3
(-1.7) 		363.1
(-0.5) 		432.4
(3) 		363.1
(-0.5) 		407.9
(1.8) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 62.4
(-0.3)
P 		41.9
(-2.5)
P 		93.1
(3)
P 		37.2
(-3)
P 		56
B 35.5
(-3)
P 		79
(3)
P 		66.3
(1.2)
P 		48.5
(-1.2)
P 		44
C 51.2
(-2.4)
P 		71.9
(-0.6)
P 		114.8
(3)
P 		44.2
(-3)
P 		71
avr 49.7
(-2.2) 		64.3
(-0.4) 		91.4
(3) 		43.3
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 69.7
(-3)
P 		118.9
(3)
P 		77.7
(-2)
P 		105.3
(1.3)
P 		95.3
(0.1)
P 		105.7
(1.4)
P 		49
B 91.3
(-2.7)
P 		109.2
(-1.2)
P 		87.1
(-3)
P 		100.7
(-1.9)
P 		160.7
(3)
P 		139.1
(1.2)
P 		74
C 111.8
(-0.7)
P 		108.4
(-1.2)
P 		95.2
(-3)
P 		100.9
(-2.2)
P 		122.3
(0.7)
P 		139.4
(3)
P 		44
avr 90.9
(-2.4) 		112.2
(0.7) 		86.7
(-3) 		102.3
(-0.7) 		126.1
(2.7) 		128.1
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192213_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8928
Sequence Type Exemplar sequence
Representative Public ID Y57G11A.1 NCBI
Target Description Y57G11A.1 /REP_DB=WormBase Gene ID /WP=CE24472 /TR=O18221 /GB=CAB16496.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=LIM domain containing proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028345(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028345 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-273) (tag-273) mRNA, complete cds. 9/11 None
GENEFINDER00000030460 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14487187:14496465:-1 9/11 None
Y57G11A.1b ENSEMBL cdna:known chromosome:CEL140:IV:14487072:14496626:-1 gene:Y57G11A.1 11/11 None
Y57G11A.1a ENSEMBL cdna:known chromosome:CEL140:IV:14487078:14496465:-1 gene:Y57G11A.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028346 6/11 Cross Hyb Matching Probes None
SNAP00000030454 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178388 2 1 NM_001028345 192213_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14487192-14496471(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16496 Hypothetical protein Y57G11A.1a [Caenorhabditis elegans] ref|NP_001023516.1| Temporarily Assigned Gene name family member (tag-273) [Caenorhabditis elegans] 0.0
blast CAE73950 Hypothetical protein CBG21574 [Caenorhabditis briggsae] 0.0
blast CAD89758 Hypothetical protein Y57G11A.1b [Caenorhabditis elegans] ref|NP_001023517.1| Temporarily Assigned Gene name family member (tag-273) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:192213_S_AT
aagaggaacgtctcgctgaggcttcagcttctcaaggaaatgaagctcgtgatgaggacg
tggcaattaaagcagagcacgcgtcgaaaatggctgcaaaatgggaaaagattcaacaaa
aggaggcgaagaaggccgagaaaggaaagatgccagagaagaaaacgggaaatggggctc
aatgatacattggatatccattattattcctcccttcttcccacaattttcctacccgta
tttaaatgtgtctgtgtcaaatttgatagattctgcctcccgccacccgataaatgctca
ttgtgcaccaagaatgtgtatcgtgcagagcaatttcagtgctttgggttactgtatcac
gtgaattgtttcaggtgtattgattgtaagcaggcgttgagagtagaaaaggctcatcga
tgccaacaatctggagatctttactgtcgtgttcacttcaaattaatggaagagaaccga
agccggaaaatgctcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGGAACGTCTCGCTGAGGCTTC 17 155 1321 Antisense
GAGGCTTCAGCTTCTCAAGGAAATG 581 405 1338 Antisense
GGCAATTAAAGCAGAGCACGCGTCG 375 533 1382 Antisense
AGAGCACGCGTCGAAAATGGCTGCA 621 69 1394 Antisense
GGATATCCATTATTATTCCTCCCTT 438 509 1512 Antisense
TCCTACCCGTATTTAAATGTGTCTG 115 593 1550 Antisense
GCCACCCGATAAATGCTCATTGTGC 652 279 1602 Antisense
GTATCGTGCAGAGCAATTTCAGTGC 490 453 1638 Antisense
AGTGCTTTGGGTTACTGTATCACGT 468 59 1658 Antisense
AGATCTTTACTGTCGTGTTCACTTC 146 67 1755 Antisense
AACCGAAGCCGGAAAATGCTCAGTT 611 143 1795 Antisense
Sequence Source Affymetrix Proprietary Database