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[192204_s_at] glycine-rich RNA-binding protein

Description D1046.1 /REP_DB=WormBase Gene ID /WP=CE20625 /TR=Q18937 /GB=CAA92294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glycine-rich RNA-binding protein
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 27      4grp_high_8_8 > 57      6grp_highest_nonorm > 84      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 565.2
(1.4)
P 		514.2
(-0.6)
P 		605.3
(3)
P 		453
(-3)
P 		152
B 576.5
(1.3)
P 		520.4
(-3)
P 		598.2
(3)
P 		530.2
(-2.2)
P 		78
C 585.3
(1.1)
P 		509.3
(-3)
P 		619.8
(3)
P 		523
(-2.3)
P 		111
avr 575.7
(1.2) 		514.6
(-2.3) 		607.8
(3) 		502.1
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 552.8
(-1.8)
P 		698.4
(1.3)
P 		494.7
(-3)
P 		611.3
(-0.5)
P 		543.8
(-2)
P 		780.1
(3)
P 		285
B 500.6
(-3)
P 		563.8
(-1.3)
P 		620.4
(0.3)
P 		604.1
(-0.2)
P 		564.7
(-1.3)
P 		721.4
(3)
P 		221
C 683.7
(1.6)
P 		558.4
(-1.4)
P 		707.2
(2.2)
P 		494
(-3)
P 		594.6
(-0.6)
P 		741.6
(3)
P 		248
avr 579
(-2.6) 		606.9
(-1.7) 		607.4
(-1.7) 		569.8
(-2.9) 		567.7
(-3) 		747.7
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 205.8
(3)
P 		111.6
(-1.1)
P 		158.2
(1)
P 		66.3
(-3)
P 		140
B 183.8
(3)
P 		128.5
(-1.7)
P 		138.6
(-0.8)
P 		113
(-3)
P 		71
C 193.7
(2)
P 		146.4
(-0.3)
P 		216
(3)
P 		88.2
(-3)
P 		128
avr 194.4
(3) 		128.8
(-0.7) 		170.9
(1.7) 		89.2
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 101.9
(-3)
P 		248.4
(3)
P 		107.7
(-2.8)
P 		155
(-0.8)
P 		164.1
(-0.5)
P 		189.9
(0.6)
P 		147
B 174.2
(-1.8)
P 		187.7
(-1.1)
P 		150.7
(-3)
P 		160
(-2.5)
P 		229.5
(1)
P 		269
(3)
P 		118
C 253.4
(3)
P 		170.4
(-0.2)
P 		180
(0.1)
P 		99.3
(-3)
P 		192.4
(0.6)
P 		248.2
(2.8)
P 		154
avr 176.5
(-0.6) 		202.2
(0.9) 		146.1
(-2.5) 		138.1
(-3) 		195.3
(0.5) 		235.7
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192204_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10229
Sequence Type Exemplar sequence
Representative Public ID D1046.1 NCBI
Target Description D1046.1 /REP_DB=WormBase Gene ID /WP=CE20625 /TR=Q18937 /GB=CAA92294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glycine-rich RNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069150 NCBI Caenorhabditis elegans D1046.1 (D1046.1) mRNA, complete cds. 11/11 None
SNAP00000023082 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8925268:8929011:1 11/11 None
GENEFINDER00000023087 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8926322:8929231:1 11/11 None
D1046.1.5 ENSEMBL cdna:known chromosome:CEL140:IV:8926316:8929011:1 gene:D1046.1 11/11 None
D1046.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8926317:8930257:1 gene:D1046.1 11/11 None
D1046.1.4 ENSEMBL cdna:known chromosome:CEL140:IV:8926317:8930282:1 gene:D1046.1 11/11 A 
D1046.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:8926317:8930297:1 gene:D1046.1 11/11 A 
D1046.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8926317:8929331:1 gene:D1046.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004944 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8926327-8929237(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycine-rich RNA-binding protein
Ensembl D1046.1
Entrez Gene 177710 Entrez gene
SwissProt Q18937 EMBL-EBI
WormBase CE03094 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248071_AT RNA recognition motif (RRM)-containing protein at
CANINE:1585493_AT similar to cleavage and polyadenylation specific factor 6, 68 kD subunit cfa
CANINE_2:CFA.12286.1.A1_AT similar to cleavage and polyadenylation specific factor 6, 68 kD subunit cfa
CANINE_2:CFAAFFX.1592.1.S1_S_AT similar to cleavage and polyadenylation specific factor 6, 68 kD subunit cfa
CANINE_2:CFAAFFX.1594.1.S1_S_AT similar to cleavage and polyadenylation specific factor 6, 68 kD subunit cfa
DROSOPHILA_2:1635863_AT dm
DROSGENOME1:154322_AT dm
HG-U133_PLUS_2:202470_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133A:202470_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133A_2:202470_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HUGENEFL:X67337_AT cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:G5901927_3P_A_AT cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:HS.64542.0.S1_3P_A_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133A_2:202469_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-FOCUS:202469_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:202469_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133A:202469_S_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95AV2:35757_AT cleavage and polyadenylation specific factor 6, 68kDa hs
HU35KSUBA:RC_D60026_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HU35KSUBC:RC_AA074276_F_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HU35KSUBD:RC_AA284565_F_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:HS.34804.0.S1_3P_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:226934_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133B:226934_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95B:45119_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95D:85022_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:236582_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133B:236582_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:238651_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133B:238651_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:238913_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133B:238913_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133_PLUS_2:243530_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U133B:243530_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95B:44761_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95C:62699_R_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95D:69631_R_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95D:69930_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95E:75532_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95D:76207_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95D:83602_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HG-U95E:84231_R_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HU35KSUBA:RC_AA348412_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
HU35KSUBB:RC_W91995_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:HS.120232.0.A1_3P_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:HS.16145.0.A1_3P_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
U133_X3P:HS.280685.0.A1_3P_AT Cleavage and polyadenylation specific factor 6, 68kDa hs
MOUSE430_2:1428231_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1428231_AT cleavage and polyadenylation specific factor 6 mm
MOUSE430_2:1428233_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1428233_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1428234_AT cleavage and polyadenylation specific factor 6 mm
MOUSE430_2:1428234_AT cleavage and polyadenylation specific factor 6 mm
MOUSE430_2:1428232_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1428232_AT cleavage and polyadenylation specific factor 6 mm
MG-U74BV2:108479_AT cleavage and polyadenylation specific factor 6 mm
MG-U74BV2:112961_AT cleavage and polyadenylation specific factor 6 mm
MG-U74BV2:106978_AT cleavage and polyadenylation specific factor 6 mm
MG-U74BV2:115547_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1437372_AT cleavage and polyadenylation specific factor 6 mm
MOUSE430_2:1437372_AT cleavage and polyadenylation specific factor 6 mm
MOE430B:1439188_AT cleavage and polyadenylation specific factor 6 mm
MOUSE430_2:1439188_AT cleavage and polyadenylation specific factor 6 mm
RG-U34C:RC_AI169591_AT cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAE230A:1376811_A_AT cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAT230_2:1376811_A_AT cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAE230B:1379729_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAT230_2:1379729_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAE230B:1394994_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAT230_2:1394994_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAE230B:1395954_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RAT230_2:1395954_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
RG-U34C:RC_AI071906_AT Cleavage and polyadenylation specific factor 6, 68kDa (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA92294 Hypothetical protein D1046.1 [Caenorhabditis elegans] ref|NP_501551.2| D1046.1 [Caenorhabditis elegans] 0.0
blast CAE74070 Hypothetical protein CBG21723 [Caenorhabditis briggsae] 1.0E-165
Sequence
Target Sequence 
>C. ELEGANS:192204_S_AT
gatgggaatgaatgcaccacctccaatgaataatcaattccagaatagaccaccacaact
tggttcaatgggtgttcagccacttatgcaaatgaatacagctatgcgtcctcctatcaa
cggtcttccaccagtccatgtcaatccacagatgttccccggacttcaaggaacagtttt
atctgacgctgagttcgaagatgtaatgacaagaaatcaaactgtatcatcgtcagctat
agctcgagcaataactgatgcatctgttggagatattaaaggagcatctgagactatatt
gaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGAATGAATGCACCACCTCCA 6 409 945 Antisense
AATGCACCACCTCCAATGAATAATC 60 167 955 Antisense
GGTTCAATGGGTGTTCAGCCACTTA 475 503 1006 Antisense
GGTGTTCAGCCACTTATGCAAATGA 80 499 1015 Antisense
AAATGAATACAGCTATGCGTCCTCC 535 119 1034 Antisense
TGTTCCCCGGACTTCAAGGAACAGT 294 563 1097 Antisense
GGAACAGTTTTATCTGACGCTGAGT 383 529 1114 Antisense
CTGACGCTGAGTTCGAAGATGTAAT 402 237 1127 Antisense
ACTGTATCATCGTCAGCTATAGCTC 508 97 1165 Antisense
GAGCAATAACTGATGCATCTGTTGG 275 391 1190 Antisense
AGGAGCATCTGAGACTATATTGACA 379 55 1224 Antisense
Sequence Source Affymetrix Proprietary Database