[Home] | [Total List]

[192200_at]

Description C01G6.6 /REP_DB=WormBase Gene ID /WP=CE00868 /TR=Q17574 /GB=CAA84637.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=NADPH-ferrihemoprotein reductase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 74      6grp_total > 57      4grp_total > 48      6grp_highest_sub > Da      6grp_cgc > 36      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 595
1 2 3 4 range
A 429.6
(-3)
P 		715
(0.1)
P 		975.6
(3)
P 		594.2
(-1.2)
P 		546
B 432.7
(-2.9)
P 		695.3
(-0.1)
P 		983.2
(3)
P 		426.7
(-3)
P 		557
C 470.1
(-3)
P 		714.7
(-0.3)
P 		1022.1
(3)
P 		481
(-2.9)
P 		552
avr 444.1
(-3) 		708.3
(-0.1) 		993.6
(3) 		500.6
(-2.4) 		550

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 772.2
(2)
P 		545.9
(-3)
P 		663.4
(-0.4)
P 		677.8
(-0.1)
P 		639.1
(-1)
P 		819
(3)
P 		273
B 762.8
(2.1)
P 		593.8
(-2.7)
P 		782.9
(2.7)
P 		703
(0.4)
P 		582.8
(-3)
P 		792.8
(3)
P 		210
C 639.9
(-0.8)
P 		567
(-2.3)
P 		647
(-0.7)
P 		807.7
(2.6)
P 		535.1
(-3)
P 		824.8
(3)
P 		290
avr 725
(0.8) 		568.9
(-3) 		697.8
(0.2) 		729.5
(1) 		585.7
(-2.6) 		812.2
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 156.4
(-0.5)
P 		155.2
(-0.6)
P 		255
(3)
P 		87
(-3)
P 		168
B 138
(-0.9)
P 		171.7
(0.5)
P 		227.8
(3)
P 		90.9
(-3)
P 		137
C 155.6
(-1.4)
P 		205.5
(-0.3)
P 		356.2
(3)
P 		81.1
(-3)
P 		275
avr 150
(-1) 		177.5
(-0.2) 		279.7
(3) 		86.3
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 142.3
(-3)
P 		194.2
(2.5)
P 		144.5
(-2.8)
P 		171.9
(0.1)
P 		192.9
(2.3)
P 		199.4
(3)
P 		57
B 265.4
(1.3)
P 		197.7
(-2.4)
P 		190.1
(-2.8)
P 		186.2
(-3)
P 		236.8
(-0.2)
P 		295.6
(3)
P 		109
C 237.2
(0.9)
P 		173
(-2.4)
P 		164.7
(-2.9)
P 		162.4
(-3)
P 		173.1
(-2.4)
P 		276.1
(3)
P 		114
avr 215
(0.2) 		188.3
(-1.5) 		166.4
(-3) 		173.5
(-2.5) 		200.9
(-0.7) 		257
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2817
Sequence Type Exemplar sequence
Representative Public ID C01G6.6 NCBI
Target Description C01G6.6 /REP_DB=WormBase Gene ID /WP=CE00868 /TR=Q17574 /GB=CAA84637.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=NADPH-ferrihemoprotein reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063577 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-165) (tag-165) mRNA, complete cds. 11/11 None
SNAP00000013219 ENSEMBL cdna:SNAP chromosome:CEL140:II:9285889:9288925:1 11/11 None
GENEFINDER00000013246 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9285889:9290553:1 11/11 None
C01G6.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:9285843:9289025:1 gene:C01G6.6 11/11 None
C01G6.6a.3 ENSEMBL cdna:known chromosome:CEL140:II:9285886:9289025:1 gene:C01G6.6 11/11 None
C01G6.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:9285889:9289025:1 gene:C01G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174471 2 1 NM_063577 192200_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9285885-9288922(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01G6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84637 Hypothetical protein C01G6.6a [Caenorhabditis elegans] ref|NP_495978.1| Temporarily Assigned Gene name family member (tag-165) [Caenorhabditis elegans] sp|Q17574|MTRR_CAEEL Putative methionine synthase reductase (MSR) 0.0
blast CAE57847 Hypothetical protein CBG00882 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008254 EMBL-EBI Flavodoxin/nitric oxide synthase 2.6E-38
Pfam IPR001433 EMBL-EBI Oxidoreductase FAD/NAD(P)-binding 1.5E-12
Pfam IPR003097 EMBL-EBI FAD-binding 5.7E-18
Pfam IPR000330 EMBL-EBI SNF2 related domain 4.6E-16
Sequence
Target Sequence 
>C. ELEGANS:192200_AT
aggactcgcaactgattggctcaattctttgagaattggagataaagttcaagttttggg
aaaggaaccggctagattcagacttccacctcttggaatgacaaagaattcggctggaaa
actgccattattgatggttggaccaggaactggagtctcggtatttctgtcattcctgca
ttttttgagaaaattgaaacaagactctccatcggactttgtcgatgttccacgtgttct
cttctttggatgtcgtgattcttctgtagatgcaatttatatgagcgaacttgaaatgtt
tgtaagcgaaggcatcctcactgatctaatcatctgtgaaagcgagcaaaagggtgaaag
agttcaagatggcttaagaaaatatctcgacaaggttcttccatttttgacagcatcgac
agagtcgaaaattttcatctgtggagacgcaaaaggaatgtctaaagatgtttggcaatg
tttctcggatattgttgccagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACTCGCAACTGATTGGCTCAAT 650 53 1473 Antisense
GAACCGGCTAGATTCAGACTTCCAC 242 347 1537 Antisense
ACTGGAGTCTCGGTATTTCTGTCAT 267 97 1621 Antisense
TTCTGTCATTCCTGCATTTTTTGAG 576 693 1637 Antisense
GAAACAAGACTCTCCATCGGACTTT 490 355 1668 Antisense
ATCGGACTTTGTCGATGTTCCACGT 347 35 1683 Antisense
CCACGTGTTCTCTTCTTTGGATGTC 544 273 1702 Antisense
TGGATGTCGTGATTCTTCTGTAGAT 146 551 1719 Antisense
GAAGGCATCCTCACTGATCTAATCA 319 333 1780 Antisense
GGTTCTTCCATTTTTGACAGCATCG 402 505 1866 Antisense
GTTTCTCGGATATTGTTGCCAGTGA 160 451 1952 Antisense
Sequence Source Affymetrix Proprietary Database