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[192196_at] zinc finger-containing protein

Description C25E10.1 /REP_DB=WormBase Gene ID /WP=CE06863 /TR=Q18155 /GB=AAA92311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger-containing protein
Cluster 6grp_total > 29      4grp_total > 03      6grp_cgc > 08      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 147.3
(-1.7)
P 		78.7
(-2.7)
A 		55.3
(-3)
A 		480.3
(3)
P 		425
B 95.4
(-2.2)
M 		107.2
(-2)
A 		51.2
(-3)
A 		397
(3)
P 		346
C 126.4
(-1.7)
P 		96.8
(-2.3)
A 		62.5
(-3)
A 		366.2
(3)
P 		304
avr 123
(-1.9) 		94.2
(-2.4) 		56.3
(-3) 		414.5
(3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 163.7
(1.6)
A 		79
(-2.3)
P 		64.6
(-3)
A 		79.9
(-2.3)
A 		193.1
(3)
P 		111.9
(-0.8)
P 		129
B 119.4
(0.1)
P 		83.8
(-3)
A 		116.9
(-0.1)
A 		152.7
(3)
P 		106.7
(-1)
P 		120.6
(0.2)
P 		69
C 147.2
(3)
P 		113.7
(-0.5)
P 		89.8
(-3)
A 		114.6
(-0.4)
A 		115.1
(-0.4)
P 		113.6
(-0.5)
P 		57
avr 143.4
(3) 		92.2
(-2.8) 		90.4
(-3) 		115.7
(-0.1) 		138.3
(2.4) 		115.4
(-0.2) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 53.6
(1.2)
P 		17.1
(-2.7)
A 		14.5
(-3)
A 		70.3
(3)
P 		56
B 30.4
(-1.5)
M 		26.5
(-1.8)
A 		11.9
(-3)
A 		84.6
(3)
P 		73
C 41.9
(0)
P 		27.8
(-2.1)
A 		21.8
(-3)
A 		61.7
(3)
P 		40
avr 42
(-0.2) 		23.8
(-2.2) 		16.1
(-3) 		72.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 30.2
(-0.8)
A 		28.1
(-1.1)
P 		14.1
(-3)
A 		20.3
(-2.2)
A 		58.3
(3)
P 		27.2
(-1.2)
P 		44
B 41.6
(1.8)
P 		27.9
(-3)
A 		28.4
(-2.8)
A 		40.4
(1.4)
P 		43.4
(2.4)
P 		45
(3)
P 		17
C 54.5
(3)
P 		34.7
(-0.8)
P 		22.9
(-3)
A 		23
(-3)
A 		37.2
(-0.3)
P 		38
(-0.1)
P 		32
avr 42.1
(2) 		30.2
(-0.9) 		21.8
(-3) 		27.9
(-1.5) 		46.3
(3) 		36.7
(0.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11634
Sequence Type Exemplar sequence
Representative Public ID C25E10.1 NCBI
Target Description C25E10.1 /REP_DB=WormBase Gene ID /WP=CE06863 /TR=Q18155 /GB=AAA92311.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger-containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072942 NCBI Caenorhabditis elegans C25E10.1 (C25E10.1) mRNA, complete cds. 11/11 None
SNAP00000038736 ENSEMBL cdna:SNAP chromosome:CEL140:V:9048333:9049474:1 11/11 None
GENEFINDER00000038744 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9047814:9049474:1 11/11 None
C25E10.1 ENSEMBL cdna:known chromosome:CEL140:V:9047814:9049474:1 gene:C25E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9047814-9049475(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger-containing protein
Gene Symbol nhr-30
Ensembl C25E10.1
Entrez Gene 182887 Entrez gene
SwissProt Q18155 EMBL-EBI
WormBase CE06863 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA92311 Hypothetical protein C25E10.1 [Caenorhabditis elegans] ref|NP_505343.1| C25E10.1 [Caenorhabditis elegans] 0.0
blast AAA92311 Hypothetical protein C25E10.1 [Caenorhabditis elegans] ref|NP_505343.1| C25E10.1 [Caenorhabditis elegans] 1.0E-175
blast CAE61163 Hypothetical protein CBG04929 [Caenorhabditis briggsae] 1.0E-134
blast CAE61163 Hypothetical protein CBG04929 [Caenorhabditis briggsae] 1.0E-108
blast CAE61162 Hypothetical protein CBG04928 [Caenorhabditis briggsae] 7.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.5E-26
Sequence
Target Sequence 
>C. ELEGANS:192196_AT
gaaacactagttcctcattggagggaacaggccaagaatactgcaatcatgtcgatgcat
tctatggctttccgaaatattccattaacagagaaatcccgcattttcaaatctttgtgg
cagaatatataccgttttgaacgaattcaaatgtctacagaagtgtttggaaaagattgt
gtcaatgaaaagaaacttgcaatctcatgtgaaaaggcgattcaactggatgctttgttt
ttcgacattgaaggagtagctcaaaacaaactaacagtcaccctacaagattacaagatt
ttcgcggagaggtgcgtgcgggaagtcgcccagccactgagtcagttgaagttgtctatt
gaggaagtggcattccttattattaattttgtactgcataatgaagaaaaaataattggg
gagtcattgaccgtttgtgacaagtttcgagatcaaatagctgatggtttgcacgagtat
tacaagaaaaatgacataattaattatgctccaagaatcaagaaaatgatgagcacaatt
gatgctatgaaaaggattcattacgatgatctcgctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACTAGTTCCTCATTGGAGGG 435 353 601 Antisense
GGCCAAGAATACTGCAATCATGTCG 31 545 630 Antisense
GTCGATGCATTCTATGGCTTTCCGA 575 473 651 Antisense
GAGAAATCCCGCATTTTCAAATCTT 176 391 691 Antisense
AACTGGATGCTTTGTTTTTCGACAT 514 143 824 Antisense
AAACTAACAGTCACCCTACAAGATT 628 125 868 Antisense
GGAGAGGTGCGTGCGGGAAGTCGCC 51 519 906 Antisense
TCGCCCAGCCACTGAGTCAGTTGAA 627 599 926 Antisense
GGGGAGTCATTGACCGTTTGTGACA 577 497 1018 Antisense
ATAGCTGATGGTTTGCACGAGTATT 290 23 1057 Antisense
GATTCATTACGATGATCTCGCTGGA 272 431 1155 Antisense
Sequence Source Affymetrix Proprietary Database