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[192187_s_at] protein kinase /// serine/threonine protein kinase

Description W09C3.1 /REP_DB=WormBase Gene ID /WP=CE14744 /TR=P91534 /GB=AAC24410.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein kinase
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 258.8
(-3)
P 		308.4
(0.2)
P 		299.5
(-0.4)
P 		351.6
(3)
P 		93
B 289
(1.4)
P 		245.9
(-3)
P 		248.3
(-2.8)
P 		304.5
(3)
P 		59
C 339
(-3)
P 		339.9
(-2.6)
P 		354.4
(3)
P 		354.2
(2.9)
P 		15
avr 295.6
(-3) 		298.1
(-2.6) 		300.7
(-2.3) 		336.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 259.9
(-3)
P 		328.4
(-0.9)
P 		408.3
(1.5)
P 		389
(0.9)
P 		393.7
(1.1)
P 		456.4
(3)
P 		197
B 301.3
(-3)
P 		345.8
(-1.8)
P 		515.3
(2.6)
P 		405.3
(-0.3)
P 		382.3
(-0.9)
P 		531.9
(3)
P 		231
C 282
(-3)
P 		394.2
(-0.9)
P 		436.1
(-0.1)
P 		405.3
(-0.7)
P 		442.5
(0)
P 		599.5
(3)
P 		318
avr 281.1
(-3) 		356.1
(-1.2) 		453.2
(1.2) 		399.9
(-0.1) 		406.2
(0) 		529.3
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 94.2
(3)
P 		66.9
(-0.8)
P 		78.3
(0.8)
P 		51.5
(-3)
P 		43
B 92.2
(3)
P 		60.7
(-2.4)
P 		57.5
(-3)
P 		64.9
(-1.7)
P 		35
C 112.2
(1.9)
P 		97.7
(0.6)
P 		123.5
(3)
P 		59.7
(-3)
P 		64
avr 99.5
(3) 		75.1
(-0.6) 		86.4
(1.1) 		58.7
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 47.9
(-3)
P 		116.8
(2.8)
P 		88.9
(0.5)
P 		98.7
(1.3)
P 		118.8
(3)
P 		111.1
(2.3)
P 		71
B 104.8
(-3)
P 		115.1
(-2.3)
P 		125.1
(-1.7)
P 		107.3
(-2.8)
P 		155.3
(0.2)
P 		198.4
(3)
P 		94
C 104.5
(-1.8)
P 		120.3
(-1)
P 		111
(-1.5)
P 		81.5
(-3)
P 		143.2
(0.1)
P 		200.7
(3)
P 		119
avr 85.7
(-3) 		117.4
(-0.7) 		108.3
(-1.4) 		95.8
(-2.3) 		139.1
(0.8) 		170.1
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192187_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2248
Sequence Type Exemplar sequence
Representative Public ID W09C3.1 NCBI
Target Description W09C3.1 /REP_DB=WormBase Gene ID /WP=CE14744 /TR=P91534 /GB=AAC24410.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059043(11), NM_059032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059043 NCBI Caenorhabditis elegans M04F3.3 (M04F3.3) mRNA, complete cds. 11/11 A 
NM_059032 NCBI Caenorhabditis elegans W09C3.1 (W09C3.1) mRNA, complete cds. 11/11 A 
SNAP00000000876 ENSEMBL cdna:SNAP chromosome:CEL140:I:4763242:4765141:-1 11/11 None
GENEFINDER00000000884 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4763242:4765022:-1 11/11 None
SNAP00000015949 ENSEMBL cdna:SNAP chromosome:CEL140:I:4718453:4719576:1 11/11 None
GENEFINDER00000015965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4718453:4719576:1 11/11 None
W09C3.1 ENSEMBL cdna:known chromosome:CEL140:I:4717912:4719576:1 gene:W09C3.1 11/11 A 
M04F3.3 ENSEMBL cdna:known chromosome:CEL140:I:4763242:4764697:-1 gene:M04F3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4717911-4719576(+) 100.0 100.0
chrI:4763241-4764911(-) 97.75 97.75
Public Domain and Genome References
Gene Title protein kinase
serine/threonine protein kinase
Ensembl W09C3.1
M04F3.3
Entrez Gene 172091 Entrez gene
189309 Entrez gene
WormBase CE39108 Wormbase
CE39114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491444 M04F3.3 [Caenorhabditis elegans] 0.0
blast AAK71382 Hypothetical protein M04F3.3 [Caenorhabditis elegans] 0.0
blast NP_491433 W09C3.1 [Caenorhabditis elegans] 0.0
blast ABA03111 Hypothetical protein W09C3.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-23
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-11
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-23
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-23
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-7
Sequence
Target Sequence 
>C. ELEGANS:192187_S_AT
agatgtatgcaccacttccatggacatcctcgaatattccagaacggattgaagctttga
aagaagatcatttgaatgaatatctttcaaaagattcatttcttagctcattccttccac
ttgttgaatatctcaattctgtgcaatatgctgatcgtccggattacatgaagatctacg
acattctctatgccaagttgacggagatcaatggaaaattgtcgggacccatgaaatacg
atgttgccagaatcaatgctttggttgctgaattgggagaaactgctcgcccaaaggagt
tatcccgcatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTATGCACCACTTCCATGGAC 299 67 677 Antisense
CCACTTCCATGGACATCCTCGAATA 543 275 688 Antisense
AGATTCATTTCTTAGCTCATTCCTT 700 65 768 Antisense
CTCATTCCTTCCACTTGTTGAATAT 502 229 783 Antisense
TATCTCAATTCTGTGCAATATGCTG 591 657 805 Antisense
ATATGCTGATCGTCCGGATTACATG 495 21 822 Antisense
GATCTACGACATTCTCTATGCCAAG 546 419 849 Antisense
GGGACCCATGAAATACGATGTTGCC 485 495 900 Antisense
GAATCAATGCTTTGGTTGCTGAATT 175 325 926 Antisense
TGGGAGAAACTGCTCGCCCAAAGGA 229 543 950 Antisense
GCCCAAAGGAGTTATCCCGCATGGA 152 287 965 Antisense
Sequence Source Affymetrix Proprietary Database