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[192184_at] Eukaryotic protein kinase domain

Description F10G8.2 /REP_DB=WormBase Gene ID /WP=CE09337 /TR=Q93453 /GB=CAB02279.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Eukaryotic protein kinase domain
Cluster 6grp_total > 79      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 3.9
(-1.4)
A 		7
(3)
A 		2.8
(-3)
A 		4.2
(-1)
A 		4
B 6
(-3)
A 		44.8
(2)
A 		52.9
(3)
A 		32.9
(0.4)
A 		47
C 33.5
(0)
A 		2
(-3)
A 		25.6
(-0.7)
A 		64.4
(3)
A 		62
avr 14.5
(-3) 		17.9
(-1.9) 		27.1
(0.9) 		33.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 8.5
(-1.4)
A 		4.9
(-2.3)
A 		1.9
(-3)
A 		26.1
(3)
A 		13.2
(-0.2)
A 		24.4
(2.6)
A 		24
B 6.9
(-2.6)
A 		35.3
(0.9)
A 		7.2
(-2.6)
A 		4
(-3)
A 		33.8
(0.7)
A 		52.4
(3)
A 		48
C 8.3
(3)
A 		3.2
(-3)
A 		4.3
(-1.7)
A 		8
(2.6)
A 		4
(-2.1)
A 		4.6
(-1.4)
A 		5
avr 7.9
(-2.1) 		14.5
(-0.3) 		4.5
(-3) 		12.7
(-0.8) 		17
(0.3) 		27.1
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(2.3)
A 		1.5
(3)
A 		0.7
(-2.3)
A 		0.6
(-3)
A 		1
B 1.9
(-3)
A 		11.1
(2.4)
A 		12.2
(3)
A 		7
(-0)
A 		10
C 11.1
(3)
A 		0.6
(-3)
A 		8.9
(1.7)
A 		10.9
(2.9)
A 		11
avr 4.8
(-2.2) 		4.4
(-3) 		7.3
(3) 		6.2
(0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.6
(-1.8)
A 		1.8
(-1.6)
A 		0.4
(-3)
A 		6.6
(3)
A 		4
(0.5)
A 		5.9
(2.3)
A 		6
B 2.4
(-2.6)
A 		11.7
(0.5)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		13.8
(1.1)
A 		19.5
(3)
A 		18
C 3.1
(3)
A 		1
(-3)
A 		1.1
(-2.7)
A 		1.6
(-1.3)
A 		1.3
(-2.1)
A 		1.5
(-1.6)
A 		2
avr 2.4
(-2) 		4.8
(-0.2) 		1.1
(-3) 		3.1
(-1.5) 		6.4
(1) 		9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.348
Sequence Type Exemplar sequence
Representative Public ID F10G8.2 NCBI
Target Description F10G8.2 /REP_DB=WormBase Gene ID /WP=CE09337 /TR=Q93453 /GB=CAB02279.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Eukaryotic protein kinase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060247 NCBI Caenorhabditis elegans F10G8.2 (F10G8.2) mRNA, complete cds. 11/11 None
F10G8.2 ENSEMBL cdna:known chromosome:CEL140:I:10029823:10030884:-1 gene:F10G8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038313 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036102 6/11 Cross Hyb Matching Probes None
SNAP00000036091 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10029753-10030815(-) 97.1 100.0
chrI:6510210-6511919(-) 91.74 91.74
chrI:6167922-6169729(-) 91.3 91.3
Public Domain and Genome References
Gene Title Eukaryotic protein kinase domain
Ensembl F10G8.2
Entrez Gene 184323 Entrez gene
SwissProt Q93453 EMBL-EBI
WormBase CE36532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02279 Hypothetical protein F10G8.2 [Caenorhabditis elegans] ref|NP_492648.2| F10G8.2 [Caenorhabditis elegans] 1.0E-125
blast AAB53009 Hypothetical protein T09B4.7 [Caenorhabditis elegans] ref|NP_491776.1| T09B4.7 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:192184_AT
atggctcatgaaaaagatcgacagtcaaaagaaggagatgaaattgtcaccaaatcaggc
aaaaagtacaaattaggtccggttcttggcgagggtggctatggaaccgtattcctatct
caagatgatgatatcaagattgctgtgattgctaacgaagtttggttcaaagagcaaaag
aagcatcacgtaatacatgtcgtacacaatttctcttcgaaactcctagtcaatacgaca
aaatattcacgatcgtcgacagttatgcgtttcaatctgcacctgattacaagaaaatca
acaaattacttgtggaggctagagaagaacgccaacttcgtgatcgtgaaaactgggatt
gggaagatgaaacaatctcgaccactatcgccacaatcacttcattctctgataaagaac
ttcgcgccaaggctgaccaacagtcaaaagagacgagtactagttttgatttttctcatt
tcttggtctcctatttctcttccattcctttgcacatcaatcagccatcatgagcttatt
gggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCATGAAAAAGATCGACAGT 71 53 106 Antisense
GATGAAATTGTCACCAAATCAGGCA 522 411 142 Antisense
TTCTTGGCGAGGGTGGCTATGGAAC 472 689 188 Antisense
AGATTGCTGTGATTGCTAACGAAGT 302 65 242 Antisense
GAAGCATCACGTAATACATGTCGTA 583 341 285 Antisense
TAATACATGTCGTACACAATTTCTC 2 635 296 Antisense
TGAAACAATCTCGACCACTATCGCC 421 573 473 Antisense
GACGAGTACTAGTTTTGATTTTTCT 293 379 557 Antisense
TTCCATTCCTTTGCACATCAATCAG 663 699 605 Antisense
TGCACATCAATCAGCCATCATGAGC 451 577 616 Antisense
TCAGCCATCATGAGCTTATTGGGAT 558 623 626 Antisense
Sequence Source Affymetrix Proprietary Database