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[192182_at] alpha-L-fucosidase precursor

Description W03G11.3 /REP_DB=WormBase Gene ID /WP=CE03783 /TR=SW:P49713 /GB=CAA91546.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=alpha-L-fucosidase precursor
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_high_8_8 > 55      6grp_highest_nonorm > 91      6grp_total > 72      4grp_total > 56      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 56.1
(-2.7)
P 		89
(-0.8)
P 		156
(3)
P 		51.4
(-3)
A 		105
B 68.7
(1.1)
P 		91
(3)
P 		75.3
(1.7)
P 		19.8
(-3)
A 		71
C 76.3
(-3)
P 		92.3
(-1.7)
P 		152.5
(3)
P 		81.8
(-2.6)
P 		76
avr 67
(-1.8) 		90.8
(0.1) 		127.9
(3) 		51
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 98.7
(-3)
P 		169.6
(-1.3)
P 		171.7
(-1.2)
P 		343.9
(3)
P 		237.9
(0.4)
P 		150.5
(-1.7)
P 		245
B 116.5
(-3)
P 		199.4
(-0.4)
P 		186.3
(-0.8)
P 		246.3
(1.1)
P 		306.5
(3)
P 		170.1
(-1.3)
P 		190
C 94
(-3)
P 		168.4
(-0.6)
P 		280.3
(2.9)
P 		282.6
(3)
P 		271.9
(2.7)
P 		136.1
(-1.7)
P 		189
avr 103.1
(-3) 		179.1
(-0.6) 		212.8
(0.5) 		290.9
(3) 		272.1
(2.4) 		152.2
(-1.4) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 20.4
(-0.7)
P 		19.3
(-0.9)
P 		40.8
(3)
P 		7.5
(-3)
A 		33
B 21.9
(2.8)
P 		22.5
(3)
P 		17.5
(1.4)
P 		4.2
(-3)
A 		18
C 25.2
(-1.3)
P 		26.5
(-1.1)
P 		53.2
(3)
P 		13.8
(-3)
P 		39
avr 22.5
(-0.1) 		22.8
(-0) 		37.2
(3) 		8.5
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 18.2
(-3)
P 		60.3
(0.7)
P 		37.4
(-1.3)
P 		87.2
(3)
P 		71.8
(1.7)
P 		36.7
(-1.4)
P 		69
B 40.5
(-3)
P 		66.4
(-1.2)
P 		45.2
(-2.7)
P 		65.2
(-1.2)
P 		124.5
(3)
P 		63.4
(-1.4)
P 		84
C 34.8
(-3)
P 		51.4
(-1.1)
P 		71.3
(1.1)
P 		56.8
(-0.5)
P 		88
(3)
P 		45.6
(-1.8)
P 		53
avr 31.2
(-3) 		59.4
(-0.3) 		51.3
(-1.1) 		69.7
(0.6) 		94.8
(3) 		48.6
(-1.4) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17075
Sequence Type Exemplar sequence
Representative Public ID W03G11.3 NCBI
Target Description W03G11.3 /REP_DB=WormBase Gene ID /WP=CE03783 /TR=SW:P49713 /GB=CAA91546.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=alpha-L-fucosidase precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077619(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077619 NCBI Caenorhabditis elegans W03G11.3 (W03G11.3) mRNA, complete cds. 10/11 None
W03G11.3 ENSEMBL cdna:known chromosome:CEL140:X:12100125:12103722:-1 gene:W03G11.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031758 7/11 Cross Hyb Matching Probes None
SNAP00000031752 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12101162-12103643(-) 100.0 100.0
Public Domain and Genome References
Gene Title alpha-L-fucosidase precursor
Ensembl W03G11.3
Entrez Gene 189173 Entrez gene
SwissProt P49713 EMBL-EBI
WormBase CE37417 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590050_AT similar to fucosidase, alpha-L- 2, plasma cfa
CANINE_2:CFA.9286.1.S1_AT similar to fucosidase, alpha-L- 2, plasma cfa
CANINE_2:CFAAFFX.1409.1.S1_AT similar to fucosidase, alpha-L- 2, plasma cfa
CHICKEN:GGA.10959.1.A1_AT similar to fucosidase, alpha-L- 2, plasma gga
CHICKEN:GGAAFFX.24272.1.S1_AT similar to fucosidase, alpha-L- 2, plasma gga
HG-U133B:223120_AT fucosidase, alpha-L- 2, plasma hs
HG-U133_PLUS_2:223120_AT fucosidase, alpha-L- 2, plasma hs
HU35KSUBA:RC_AA234925_AT fucosidase, alpha-L- 2, plasma hs
HU35KSUBA:W52490_AT fucosidase, alpha-L- 2, plasma hs
U133_X3P:G13111747_3P_AT fucosidase, alpha-L- 2, plasma hs
HG-U95B:48543_AT fucosidase, alpha-L- 2, plasma hs
MG-U74BV2:107105_AT fucosidase, alpha-L- 2, plasma mm
MOE430A:1416046_A_AT fucosidase, alpha-L- 2, plasma mm
MOUSE430A_2:1416046_A_AT fucosidase, alpha-L- 2, plasma mm
MOUSE430_2:1416046_A_AT fucosidase, alpha-L- 2, plasma mm
MOE430A:1416047_AT fucosidase, alpha-L- 2, plasma mm
MOUSE430A_2:1416047_AT fucosidase, alpha-L- 2, plasma mm
MOUSE430_2:1416047_AT fucosidase, alpha-L- 2, plasma mm
MOE430B:1440313_AT fucosidase, alpha-L- 2, plasma mm
MOUSE430_2:1440313_AT fucosidase, alpha-L- 2, plasma mm
MU19KSUBC:TC37136_AT Fucosidase, alpha-L- 2, plasma, mRNA (cDNA clone MGC:25735 IMAGE:3983067) mm
MU19KSUBC:TC37136_G_AT Fucosidase, alpha-L- 2, plasma, mRNA (cDNA clone MGC:25735 IMAGE:3983067) mm
MU19KSUBC:TC40763_AT Fucosidase, alpha-L- 2, plasma, mRNA (cDNA clone MGC:25735 IMAGE:3983067) mm
RAE230A:1376249_AT fucosidase, alpha-L- 2, plasma rn
RAT230_2:1376249_AT fucosidase, alpha-L- 2, plasma rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4560 alpha-L-fucosidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91546 Hypothetical protein W03G11.3 [Caenorhabditis elegans] ref|NP_510020.2| W03G11.3 [Caenorhabditis elegans] sp|P49713|FUCO_CAEEL Putative alpha-L-fucosidase precursor (Alpha-L-fucoside fucohydrolase) 0.0
blast CAE69872 Hypothetical protein CBG16208 [Caenorhabditis briggsae] 1.0E-179
blast XP_796773 PREDICTED: similar to fucosidase, alpha-L- 2, plasma [Strongylocentrotus purpuratus] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR000933 EMBL-EBI Glycoside hydrolase, family 29 (alpha-L-fucosidase) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192182_AT
atccagagcaagtatcatatcctcaaatgattgacatcgtcacaaagtataaccccgaag
tagtttggagtgatggcgaatgggacaagtcggatgattattggaaagcaaaagaatttc
ttgcatggctctacaattctagtccggtcaaagatcaagttgtcgtcaatgatagatggg
gtactggtacaatgggaaaacacggcggatttatgacatactcagatcactatgatccag
gaaagctattagagaaaaagtgggaaaattgcatgactttggataaacattcatggggaa
atcggagagacatgaaagcatcagaagtgaatacagcttacgagataatcgagcagttgg
caagaacaatcgcgtgcaatggaaacttgctattgaatgttggaccgaatatgcatggac
aaatccctgctatatttgaggatcgactcgaagaaattggcagatttgtgaacatcacat
ccgaggccatatttggtacaaggccatggattcatcaaaacgacaccagtgcttcaaatg
tttggtatgtcgaatttcaacaactgagcacacatgtcttttcaggtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGAGCAAGTATCATATCCTCA 536 39 614 Antisense
GACATCGTCACAAAGTATAACCCCG 251 367 646 Antisense
AATTTCTTGCATGGCTCTACAATTC 110 175 728 Antisense
TGGCTCTACAATTCTAGTCCGGTCA 593 543 739 Antisense
AACACGGCGGATTTATGACATACTC 71 135 812 Antisense
GCAGTTGGCAAGAACAATCGCGTGC 236 313 966 Antisense
TATGCATGGACAAATCCCTGCTATA 429 657 1023 Antisense
GAACATCACATCCGAGGCCATATTT 230 351 1083 Antisense
GGTACAAGGCCATGGATTCATCAAA 706 501 1108 Antisense
AAACGACACCAGTGCTTCAAATGTT 642 125 1131 Antisense
GAGCACACATGTCTTTTCAGGTATA 235 391 1179 Antisense
Sequence Source Affymetrix Proprietary Database