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[192179_s_at] Giant secretory protein I-C

Description B0303.14 /REP_DB=WormBase Gene ID /WP=CE00003 /TR=SW:P34263 /GB=AAA27904.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Giant secretory protein I-C
Cluster 6grp_high1_10_10 > 55      6grp_total > 55      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 164.7
(-0.5)
M 		192.8
(1.4)
A 		127.4
(-3)
A 		216.9
(3)
A 		90
B 224.1
(3)
P 		145.5
(-2.9)
A 		144.8
(-3)
M 		211.9
(2.1)
P 		79
C 219.8
(1.3)
P 		126
(-3)
A 		202
(0.5)
P 		256.7
(3)
A 		131
avr 202.9
(0.9) 		154.8
(-3) 		158.1
(-2.7) 		228.5
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 142.5
(-3)
A 		200.9
(1.6)
P 		219.3
(3)
P 		168.8
(-0.9)
P 		153
(-2.2)
P 		146
(-2.7)
A 		77
B 166.8
(-2)
P 		231.4
(1)
P 		228.1
(0.8)
P 		178.4
(-1.4)
M 		144.1
(-3)
P 		275.3
(3)
P 		131
C 107.4
(-3)
A 		270.7
(2.7)
P 		246.9
(1.9)
P 		279.9
(3)
P 		153.3
(-1.4)
A 		242.5
(1.7)
P 		173
avr 138.9
(-3) 		234.3
(3) 		231.4
(2.8) 		209
(1.4) 		150.1
(-2.3) 		221.3
(2.2) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 60
(3)
M 		41.9
(-0.8)
A 		33.3
(-2.7)
A 		31.7
(-3)
A 		28
B 71.5
(3)
P 		35.9
(-2.6)
A 		33.6
(-3)
M 		45.2
(-1.2)
P 		38
C 72.7
(3)
P 		36.2
(-3)
A 		70.4
(2.6)
P 		43.3
(-1.8)
A 		37
avr 68.1
(3) 		38
(-3) 		45.8
(-1.4) 		40.1
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 26.3
(-3)
A 		71.5
(3)
P 		47.8
(-0.1)
P 		42.8
(-0.8)
P 		46.2
(-0.4)
P 		35.6
(-1.8)
A 		45
B 58
(-1.8)
P 		77
(0.2)
P 		55.4
(-2.1)
P 		47.3
(-3)
M 		58.6
(-1.8)
P 		102.7
(3)
P 		55
C 39.8
(-3)
A 		82.6
(3)
P 		62.8
(0.2)
P 		56.3
(-0.7)
P 		49.6
(-1.6)
A 		81.2
(2.8)
P 		43
avr 41.4
(-3) 		77
(3) 		55.3
(-0.7) 		48.8
(-1.8) 		51.5
(-1.3) 		73.2
(2.4) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192179_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6464
Sequence Type Exemplar sequence
Representative Public ID B0303.14 NCBI
Target Description B0303.14 /REP_DB=WormBase Gene ID /WP=CE00003 /TR=SW:P34263 /GB=AAA27904.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Giant secretory protein I-C
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066521 NCBI Caenorhabditis elegans B0303.14 (B0303.14) mRNA, complete cds. 11/11 None
SNAP00000042411 ENSEMBL cdna:SNAP chromosome:CEL140:III:8714224:8716058:-1 11/11 None
GENEFINDER00000042417 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8714224:8716058:-1 11/11 None
B0303.14 ENSEMBL cdna:known chromosome:CEL140:III:8713891:8716086:-1 gene:B0303.14 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8714218-8716053(-) 100.0 100.0
Public Domain and Genome References
Gene Title Giant secretory protein I-C
Ensembl B0303.14
Entrez Gene 176223 Entrez gene
SwissProt P34263 EMBL-EBI
WormBase CE00003 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27904 Hypothetical protein B0303.14 [Caenorhabditis elegans] ref|NP_498922.1| B0303.14 [Caenorhabditis elegans] sp|P34263|YKAD_CAEEL Hypothetical protein B0303.14 in chromosome III 0.0
blast CAE69288 Hypothetical protein CBG15343 [Caenorhabditis briggsae] 2.0E-98
blast CAE64390 Hypothetical protein CBG09080 [Caenorhabditis briggsae] 3.0E-94
Sequence
Target Sequence 
>C. ELEGANS:192179_S_AT
gtttgctgccgtgatgtctgatgaattgatgaagtacgtcacaaagtacatcatggaaga
cgatgaaatgccaattccttctcttctttctgcaattctttgtgctcactggccccgtca
attggcaaaagcatttgataacatcaatccaattttgtacacaattgtttgtcttatcaa
aggatggattgaagttgtcagagaggatacggagagatactacaaagaagagaagaagcc
aaagtaccaagtagctcgtgaggattcatttgaagagccaactccagaaccaagcaaaga
agaagaagagaaaatcattgaagaaccagaaatggtgaaccgatgtgcagttggactatc
cgatctttgtgatactgctcaacgtcagctctgggtcaactggatgactgtcacagatga
gatttatcaatgtattaagccatcgatcactcataatccaaatatcactggatctgtgaa
gggtcgtcttttggatactttccttcagatgaatcaatggacaaagaatcggacagcttc
tgtcaagcacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCTGCCGTGATGTCTGATGAA 507 451 654 Antisense
TCTCTTCTTTCTGCAATTCTTTGTG 173 613 733 Antisense
TCACTGGCCCCGTCAATTGGCAAAA 433 627 759 Antisense
AAGTACCAAGTAGCTCGTGAGGATT 537 157 895 Antisense
GTGCAGTTGGACTATCCGATCTTTG 526 479 998 Antisense
GATCTTTGTGATACTGCTCAACGTC 55 421 1015 Antisense
CAACGTCAGCTCTGGGTCAACTGGA 319 187 1033 Antisense
AAGCCATCGATCACTCATAATCCAA 362 149 1090 Antisense
ACTGGATCTGTGAAGGGTCGTCTTT 23 95 1120 Antisense
GTCGTCTTTTGGATACTTTCCTTCA 455 473 1136 Antisense
TCGGACAGCTTCTGTCAAGCACGCA 144 607 1182 Antisense
Sequence Source Affymetrix Proprietary Database