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[192176_s_at]

Description C33B4.3 /REP_DB=WormBase Gene ID /WP=CE01508 /TR=Q09493 /GB=CAA88324.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ankyrin and proline rich domains
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 52      6grp_cgc > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 776.1
(1.6)
P 		857.3
(3)
P 		699.2
(0.2)
P 		516.7
(-3)
P 		341
B 778.1
(1.4)
P 		842.6
(3)
P 		843.4
(3)
P 		602.6
(-3)
P 		241
C 784.3
(3)
P 		732.6
(1.5)
P 		764.7
(2.4)
P 		575.8
(-3)
P 		209
avr 779.5
(2.2) 		810.8
(3) 		769.1
(2) 		565
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 757
1 2 3 4 5 6 range
A 1119.5
(3)
P 		1020.2
(2.1)
P 		455.6
(-3)
P 		537.2
(-2.3)
P 		755.4
(-0.3)
P 		533.1
(-2.3)
P 		664
B 953.2
(3)
P 		918.4
(2.6)
P 		418
(-3)
P 		636.4
(-0.6)
P 		685.7
(0)
P 		485.1
(-2.2)
P 		535
C 1175.2
(3)
P 		939.1
(1)
P 		623
(-1.7)
P 		525
(-2.5)
P 		780.6
(-0.4)
P 		469.1
(-3)
P 		706
avr 1082.6
(3) 		959.2
(1.7) 		498.9
(-3) 		566.2
(-2.3) 		740.6
(-0.5) 		495.8
(-3) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 282.6
(3)
P 		186.1
(0.2)
P 		182.8
(0.1)
P 		75.6
(-3)
P 		207
B 248.1
(3)
P 		208.1
(1)
P 		195.4
(0.4)
P 		128.4
(-3)
P 		120
C 259.6
(2.8)
P 		210.6
(1)
P 		266.5
(3)
P 		97.1
(-3)
P 		169
avr 263.4
(3) 		201.6
(0.7) 		214.9
(1.2) 		100.4
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 206.4
(-0.6)
P 		362.8
(3)
P 		99.2
(-3)
P 		136.2
(-2.2)
P 		228
(-0.1)
P 		129.8
(-2.3)
P 		264
B 331.7
(3)
P 		305.7
(2.3)
P 		101.5
(-3)
P 		168.6
(-1.3)
P 		278.6
(1.6)
P 		180.9
(-0.9)
P 		230
C 435.6
(3)
P 		286.6
(0.3)
P 		158.6
(-2)
P 		105.6
(-3)
P 		252.6
(-0.3)
P 		157
(-2.1)
P 		330
avr 324.6
(3) 		318.4
(2.8) 		119.8
(-3) 		136.8
(-2.5) 		253.1
(0.9) 		155.9
(-1.9) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192176_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3093
Sequence Type Exemplar sequence
Representative Public ID C33B4.3 NCBI
Target Description C33B4.3 /REP_DB=WormBase Gene ID /WP=CE01508 /TR=Q09493 /GB=CAA88324.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ankyrin and proline rich domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026835(11), NM_001026836(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026835 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-67) (tag-67) mRNA, complete cds. 11/11 None
NM_001026836 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-67) (tag-67) mRNA, complete cds. 9/11 None
SNAP00000020558 ENSEMBL cdna:SNAP chromosome:CEL140:II:11384830:11390689:-1 11/11 None
GENEFINDER00000020561 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11384830:11390689:-1 11/11 None
C33B4.3a ENSEMBL cdna:known chromosome:CEL140:II:11384500:11390689:-1 gene:C33B4.3 11/11 A 
C33B4.3b ENSEMBL cdna:known chromosome:CEL140:II:11384549:11390767:-1 gene:C33B4.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11384826-11390686(-) 95.38 100.0
Public Domain and Genome References
Ensembl C33B4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88324 Hypothetical protein C33B4.3a [Caenorhabditis elegans] ref|NP_001022006.1| Temporarily Assigned Gene name family member (tag-67) [Caenorhabditis elegans] 0.0
blast CAE59515 Hypothetical protein CBG02907 [Caenorhabditis briggsae] 0.0
blast CAE54886 Hypothetical protein C33B4.3b [Caenorhabditis elegans] ref|NP_001022007.1| Temporarily Assigned Gene name family member (tag-67) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.90000009536743
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.69999980926514
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 5.40000009536743
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.8E-11
Pfam IPR002110 EMBL-EBI Ankyrin 0.024
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.38
Pfam IPR002110 EMBL-EBI Ankyrin 0.0031
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 22.0
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 2.8E-15
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 2.8E-15
Sequence
Target Sequence 
>C. ELEGANS:192176_S_AT
ggacagtgggtacacatcttctcgaacgtcactggaaccatctgaatcggaagaaaaaga
tcatcgaccccatttctcacttgatcactctccaaatgttcaaagagtgacactgatctc
tcagcatctcgaggataattacggacagaaggacaatatgtctgttgcctcgtcgtcaac
tgcgtcatcatcatcaacagttgatctaacgaaacctggatgcttcgtggtaccatctca
tgtcattccacctgtcgattatgatgatgatccggattctggaacaggcgatagcgatgg
agagattcgctgtagtgaaatatcattcgaacacaagaaggtagatgtctggtcggtgga
tgacgtcatcggttggctctcatcactacacctctctgaatatacaccagcatttcgaag
tcaacgaatcaatggccgatgccttcgccagtgcgatcggtctcgatttacacagctcgg
tgtcacccgaattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAGTGGGTACACATCTTCTCGA 309 525 2805 Antisense
AAAAAGATCATCGACCCCATTTCTC 655 129 2858 Antisense
TCTCACTTGATCACTCTCCAAATGT 603 613 2879 Antisense
TGACACTGATCTCTCAGCATCTCGA 612 571 2912 Antisense
GAAACCTGGATGCTTCGTGGTACCA 41 359 3015 Antisense
CGTGGTACCATCTCATGTCATTCCA 33 245 3030 Antisense
TGGATGACGTCATCGGTTGGCTCTC 683 549 3161 Antisense
ACTACACCTCTCTGAATATACACCA 298 101 3189 Antisense
ACGAATCAATGGCCGATGCCTTCGC 35 93 3228 Antisense
GATCGGTCTCGATTTACACAGCTCG 120 419 3259 Antisense
ACAGCTCGGTGTCACCCGAATTGCT 108 107 3276 Antisense
Sequence Source Affymetrix Proprietary Database