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[192175_at] MST101-2 protein (Fruit Fly)

Description C27D6.3 /REP_DB=WormBase Gene ID /WP=CE01813 /TR=SW:Q10032 /GB=AAC46723.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=MST101-2 protein (Fruit Fly)
Cluster 6grp_total > 78      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 25.6
(-0.6)
A 		24.9
(-0.7)
A 		2.6
(-3)
A 		60
(3)
A 		57
B 36.8
(-1.8)
A 		48
(0.6)
A 		30.9
(-3)
A 		59.4
(3)
M 		29
C 39.3
(-1.8)
A 		33.8
(-2.1)
A 		19.5
(-3)
A 		116
(3)
P 		97
avr 33.9
(-1.4) 		35.6
(-1.2) 		17.7
(-3) 		78.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 14.7
(-3)
A 		26
(-2.7)
A 		18.2
(-2.9)
A 		75.5
(-1.5)
P 		157
(0.5)
P 		258.8
(3)
P 		244
B 39.4
(-2.8)
A 		41.3
(-2.7)
A 		27.9
(-3)
A 		39.7
(-2.8)
A 		116.3
(-1.3)
P 		347.9
(3)
P 		320
C 24.6
(-3)
A 		36.1
(-2.8)
M 		41.8
(-2.7)
A 		24.2
(-3)
A 		120.3
(-1.2)
P 		339.8
(3)
P 		316
avr 26.2
(-3) 		34.5
(-2.8) 		29.3
(-2.9) 		46.5
(-2.6) 		131.2
(-0.8) 		315.5
(3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.3
(3)
A 		5.4
(0.3)
A 		0.7
(-3)
A 		8.8
(2.7)
A 		9
B 11.7
(1.9)
A 		11.9
(2.1)
A 		7.2
(-3)
A 		12.7
(3)
M 		6
C 13
(-0.1)
A 		9.7
(-1.6)
A 		6.8
(-3)
A 		19.6
(3)
P 		13
avr 11.3
(1.4) 		9
(-0.2) 		4.9
(-3) 		13.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 2.7
(-3)
A 		9.3
(-2.3)
A 		4
(-2.9)
A 		19.1
(-1.4)
P 		47.4
(1.4)
P 		63
(3)
P 		60
B 13.7
(-2.7)
A 		13.8
(-2.7)
A 		6.8
(-3)
A 		10.5
(-2.8)
A 		47.2
(-1)
P 		129.7
(3)
P 		123
C 9.1
(-2.8)
A 		11
(-2.7)
M 		10.6
(-2.7)
A 		4.9
(-3)
A 		38.9
(-1.1)
P 		113.7
(3)
P 		109
avr 8.5
(-2.9) 		11.4
(-2.7) 		7.1
(-3) 		11.5
(-2.7) 		44.5
(-0.6) 		102.1
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5741
Sequence Type Exemplar sequence
Representative Public ID C27D6.3 NCBI
Target Description C27D6.3 /REP_DB=WormBase Gene ID /WP=CE01813 /TR=SW:Q10032 /GB=AAC46723.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=MST101-2 protein (Fruit Fly)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062566 NCBI Caenorhabditis elegans C27D6.3 (C27D6.3) mRNA, complete cds. 11/11 None
SNAP00000035740 ENSEMBL cdna:SNAP chromosome:CEL140:II:5173774:5174177:-1 11/11 None
GENEFINDER00000035751 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5173774:5174177:-1 11/11 None
C27D6.3 ENSEMBL cdna:known chromosome:CEL140:II:5173740:5174177:-1 gene:C27D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5173771-5174175(-) 78.99 100.0
Public Domain and Genome References
Gene Title MST101-2 protein (Fruit Fly)
Ensembl C27D6.3
Entrez Gene 173886 Entrez gene
SwissProt Q10032 EMBL-EBI
WormBase CE01813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494967 C27D6.3 [Caenorhabditis elegans] gb|AAC46723.1| Hypothetical protein C27D6.3 [Caenorhabditis elegans] sp|Q10032|YQ93_CAEEL Hypothetical protein C27D6.3 in chromosome II 7.0E-40
blast CAE59043 Hypothetical protein CBG02324 [Caenorhabditis briggsae] 8.0E-17
blast NP_494876 F11G11.4 [Caenorhabditis elegans] gb|AAB37839.1| Hypothetical protein F11G11.4 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494967.1 1 79-101
C27D6.3 1 79-101
SNAP00000035740 1 79-101
GENEFINDER00000035751 1 79-101
Sequence
Target Sequence 
>C. ELEGANS:192175_AT
ggcggacgacaatgtttcattcacggatcaagggactgctgtcggagatgagaagaagaa
aggaggatcttctgcaatgcttgacatgctcggacagttggaaaagaaggagacaaagaa
gaaaggaaagaagaacaagaagagcaagaagaaggcgaagaagggaaagaccaagaaggt
tcgaaaagcagacaagtacgagtctcaaaactttctgtttcgagtggaaggagccatgtt
ctgtgcgggaattatcgttgctatgattatgctgttcgtcatcattatctacggaataat
cacttcaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGACGACAATGTTTCATTCACG 419 539 15 Antisense
TCACGGATCAAGGGACTGCTGTCGG 341 625 35 Antisense
CTTCTGCAATGCTTGACATGCTCGG 663 219 83 Antisense
GCTTGACATGCTCGGACAGTTGGAA 438 305 93 Antisense
GTACGAGTCTCAAAACTTTCTGTTT 182 459 210 Antisense
GAGTGGAAGGAGCCATGTTCTGTGC 606 401 236 Antisense
GAGCCATGTTCTGTGCGGGAATTAT 187 383 245 Antisense
TGTGCGGGAATTATCGTTGCTATGA 87 557 256 Antisense
CGTTGCTATGATTATGCTGTTCGTC 372 247 270 Antisense
GCTGTTCGTCATCATTATCTACGGA 684 295 285 Antisense
ATCTACGGAATAATCACTTCAAGTC 628 31 301 Antisense
Sequence Source Affymetrix Proprietary Database