[Home] | [Total List]

[192170_s_at] fumarate reductase flavoprotein

Description F48E8.3 /REP_DB=WormBase Gene ID /WP=CE01955 /TR=Q09567 /GB=AAC46539.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=fumarate reductase flavoprotein
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 54      6grp_total > 73      4grp_total > 03      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1572
1 2 3 4 range
A 503.5
(-2)
P 		308
(-3)
P 		310.9
(-3)
P 		1506
(3)
P 		1198
B 615.6
(-1.5)
P 		221.9
(-3)
P 		323.5
(-2.6)
P 		1793.3
(3)
P 		1571
C 400.1
(-2.1)
P 		221.3
(-3)
P 		298.2
(-2.6)
P 		1367.6
(3)
P 		1146
avr 506.4
(-1.8) 		250.4
(-3) 		310.9
(-2.7) 		1555.6
(3) 		1305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1046
1 2 3 4 5 6 range
A 683.4
(-2.9)
P 		665.8
(-3)
P 		972
(-1.1)
P 		1613.7
(3)
P 		1218.2
(0.5)
P 		959
(-1.1)
P 		948
B 567.3
(-3)
P 		633.7
(-2.6)
P 		840.3
(-1.2)
P 		1459.1
(3)
P 		1271.2
(1.7)
P 		793.1
(-1.5)
P 		892
C 701.1
(-3)
P 		740.6
(-2.6)
P 		1286.5
(2.7)
P 		1313.3
(3)
P 		948.6
(-0.6)
P 		816
(-1.9)
P 		612
avr 650.6
(-3) 		680
(-2.8) 		1032.9
(-0.2) 		1462
(3) 		1146
(0.7) 		856
(-1.5) 		811
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 183.3
(1.5)
P 		66.9
(-3)
P 		81.3
(-2.4)
P 		220.5
(3)
P 		154
B 196.3
(-0.4)
P 		54.8
(-3)
P 		75
(-2.6)
P 		382.2
(3)
P 		327
C 132.5
(-0.5)
P 		63.6
(-3)
P 		103.9
(-1.6)
P 		230.6
(3)
P 		167
avr 170.7
(0) 		61.8
(-3) 		86.7
(-2.3) 		277.8
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 126
(-3)
P 		236.8
(-0.7)
P 		211.7
(-1.2)
P 		409.3
(3)
P 		367.6
(2.1)
P 		233.5
(-0.7)
P 		283
B 197.4
(-3)
P 		210.9
(-2.7)
P 		204
(-2.9)
P 		386.5
(0.6)
P 		516.5
(3)
P 		295.7
(-1.2)
P 		319
C 259.9
(-1)
P 		226
(-3)
P 		327.4
(3)
P 		264.1
(-0.7)
P 		307
(1.8)
P 		273.2
(-0.2)
P 		101
avr 194.4
(-3) 		224.6
(-2.1) 		247.7
(-1.4) 		353.3
(1.7) 		397
(3) 		267.5
(-0.8) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192170_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7582
Sequence Type Exemplar sequence
Representative Public ID F48E8.3 NCBI
Target Description F48E8.3 /REP_DB=WormBase Gene ID /WP=CE01955 /TR=Q09567 /GB=AAC46539.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=fumarate reductase flavoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065763 NCBI Caenorhabditis elegans F48E8.3 (F48E8.3) mRNA, complete cds. 11/11 None
SNAP00000003642 ENSEMBL cdna:SNAP chromosome:CEL140:III:5461341:5463999:1 11/11 None
GENEFINDER00000003648 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5461371:5463999:1 11/11 None
F48E8.3.4 ENSEMBL cdna:known chromosome:CEL140:III:5461262:5464326:1 gene:F48E8.3 11/11 None
F48E8.3.2 ENSEMBL cdna:known chromosome:CEL140:III:5461332:5464326:1 gene:F48E8.3 11/11 None
F48E8.3.1 ENSEMBL cdna:known chromosome:CEL140:III:5461334:5464326:1 gene:F48E8.3 11/11 None
F48E8.3.3 ENSEMBL cdna:known chromosome:CEL140:III:5461369:5464326:1 gene:F48E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5461369-5463998(+) 100.0 100.0
Public Domain and Genome References
Gene Title fumarate reductase flavoprotein
Ensembl F48E8.3
Entrez Gene 175751 Entrez gene
SwissProt Q09567 EMBL-EBI
WormBase CE36546 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46539 Hypothetical protein F48E8.3 [Caenorhabditis elegans] ref|NP_498164.3| F48E8.3 [Caenorhabditis elegans] 0.0
blast CAE61352 Hypothetical protein CBG05192 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Transcriptional regulator TyrR, C-terminal domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Transcriptional regulator TyrR, C-terminal domain 0.150000005960464
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 8.5E-10
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 1.6E-30
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 8.5E-10
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 1.6E-30
Sequence
Target Sequence 
>C. ELEGANS:192170_S_AT
ggaaagattcttgagctcgctgagccaattgaagagagtttccaaggaggatctgctgga
agaaatgcggcgattatgattatgaatgaagcaaatgttgaggcttttggcagacctgct
ttcaatttttattcgattgttaagaaattctttgcgaaatacgagaactccgcggagctt
gcaaaggctttgggtatcgacgaatcagctattaaaaccactttggaggaatatcagaag
agttttgatggaaaatctgaagatcctttcggcaaaaaggtgttcccagtgtctgcaatc
tctccgactgagccaatctacgcagcaatcgtcgtcccagcaatccactacaccatgggt
ggcctgaaaatcgacgaggccacccgcgtcatcgatgagcatggcaagccaattgtcggc
ctttttgccgctggagaagtcactggcggagttcatggttccaatcgattggctggaaat
tccctgcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGATTCTTGAGCTCGCTGAGC 291 527 874 Antisense
TTGAGGCTTTTGGCAGACCTGCTTT 375 703 971 Antisense
AACTCCGCGGAGCTTGCAAAGGCTT 81 143 1039 Antisense
AAAAGGTGTTCCCAGTGTCTGCAAT 470 131 1148 Antisense
TCCGACTGAGCCAATCTACGCAGCA 157 595 1176 Antisense
GCAATCCACTACACCATGGGTGGCC 219 321 1213 Antisense
CCCGCGTCATCGATGAGCATGGCAA 169 261 1256 Antisense
GCAAGCCAATTGTCGGCCTTTTTGC 166 321 1277 Antisense
GCCTTTTTGCCGCTGGAGAAGTCAC 386 267 1292 Antisense
GTCACTGGCGGAGTTCATGGTTCCA 584 463 1312 Antisense
GATTGGCTGGAAATTCCCTGCTTGA 419 435 1340 Antisense
Sequence Source Affymetrix Proprietary Database